BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937952

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50930.1 | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:1...   444    5e-124


> AT3G50930.1 | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929526-18931839 
FORWARD LENGTH=2314
Length=2314

 Score =  444 bits (240),  Expect = 5e-124
 Identities = 461/560 (82%), Gaps = 45/560 (8%)
 Strand=Plus/Plus

Query  1     TTCTCACCACCGCAGCTTCGATGGCTAATACCGCAATGCTAGCTCGATCGGTATTCCAAG  60
             ||||||||||||| |||||| |||||   ||||||||||||||||||||  || ||||||
Sbjct  473   TTCTCACCACCGCGGCTTCGGTGGCTGCGACCGCAATGCTAGCTCGATCTTTAGTCCAAG  532

Query  61    ATTATTTGCCTGACGAGGTGAAAATCTATATCTCTGAAGGC-TTTCGTAGCTACTTTCGC  119
             ||||||||||||||||||||     |   ||| ||  |  | |||| ||  |   ||| |
Sbjct  533   ATTATTTGCCTGACGAGGTG-----C---ATCACT--A--CATTTCCTA--TGGATTC-C  577

Query  120   GGCCGCTTC-TTGCTTTACTTTTCCA-CTCAAATGACAATAACCATCGAAGAATTTGATG  177
             |  | | || |||  |||||| | || | |||||||| |||| ||||||||||||||| |
Sbjct  578   GTTC-CATCTTTG-GTTACTTCT-CATCCCAAATGACGATAATCATCGAAGAATTTGAAG  634

Query  178   GATTTGTTCACAATCAAGTCTTTGAAGCTGCAAAGGCCTATCTAGCCACCAAAATCTCTC  237
             | |||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  635   GTTTTGCTCACAATGAAGTCTTTGAAGCTGCAGAGGCCTATCTAGCCACCAAGATCTCTC  694

Query  238   CTTCTAACaaaaaaaTTAAAGTGAGTAAACACCAGAAAGAAAA-AAGCTACAACGTCACC  296
             |||||||||||| ||| ||||||||||||||  |||||||||| || |||||| ||||||
Sbjct  695   CTTCTAACAAAAGAATCAAAGTGAGTAAACATGAGAAAGAAAACAA-CTACAATGTCACC  753

Query  297   GTGGAACGTGATGAGGAAGTTGTGGACACTTTCAATGGCGTCCAGTTCCGGTGGGTCCTC  356
             ||||| ||||| || |||||||| ||||| | |||||||||| | |||| |||| |||||
Sbjct  754   GTGGAGCGTGACGAAGAAGTTGTTGACACCTACAATGGCGTCAAATTCCAGTGGATCCTC  813

Query  357   CGTTGTTGCCATGTTGAGTCCAAG-A-AT-CA-AA---AC----TCCAAA--GC-CA---  399
             | |||| | ||||| ||||||||| |  | || ||   ||    || |||   | ||   
Sbjct  814   CATTGTCGTCATGTCGAGTCCAAGCACTTCCACAACCCACGGGATCTAAACTCCACACTG  873

Query  400   A-ATCAGAGGTCCGATCATTCGAGCTCAACTTCCACAA-ACAATTCAAAGACATAGCTCT  457
             | ||| ||||||||||||||||| |||||||||||||| | ||||||||||| |||||||
Sbjct  874   AGATCTGAGGTCCGATCATTCGAACTCAACTTCCACAAGA-AATTCAAAGACGTAGCTCT  932

Query  458   TGAATCTTACTTGCCATTCATGGTGAAAAGAGCAACGTTGATGAAGCAAGAGAAGAAAA-  516
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct  933   TGAATCTTACTTGCCATTCATGGTGAAAAGAGCCACGTTGATGAAGCAAGAGAAGAAAAC  992

Query  517   AGCTTAAGATCTTCACTCTC  536
             | || |||||||||||||||
Sbjct  993   A-CTCAAGATCTTCACTCTC  1011



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5