BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937952 Length=586 Score E Sequences producing significant alignments: (Bits) Value AT3G50930.1 | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:1... 444 5e-124 > AT3G50930.1 | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929526-18931839 FORWARD LENGTH=2314 Length=2314 Score = 444 bits (240), Expect = 5e-124 Identities = 461/560 (82%), Gaps = 45/560 (8%) Strand=Plus/Plus Query 1 TTCTCACCACCGCAGCTTCGATGGCTAATACCGCAATGCTAGCTCGATCGGTATTCCAAG 60 ||||||||||||| |||||| ||||| |||||||||||||||||||| || |||||| Sbjct 473 TTCTCACCACCGCGGCTTCGGTGGCTGCGACCGCAATGCTAGCTCGATCTTTAGTCCAAG 532 Query 61 ATTATTTGCCTGACGAGGTGAAAATCTATATCTCTGAAGGC-TTTCGTAGCTACTTTCGC 119 |||||||||||||||||||| | ||| || | | |||| || | ||| | Sbjct 533 ATTATTTGCCTGACGAGGTG-----C---ATCACT--A--CATTTCCTA--TGGATTC-C 577 Query 120 GGCCGCTTC-TTGCTTTACTTTTCCA-CTCAAATGACAATAACCATCGAAGAATTTGATG 177 | | | || ||| |||||| | || | |||||||| |||| ||||||||||||||| | Sbjct 578 GTTC-CATCTTTG-GTTACTTCT-CATCCCAAATGACGATAATCATCGAAGAATTTGAAG 634 Query 178 GATTTGTTCACAATCAAGTCTTTGAAGCTGCAAAGGCCTATCTAGCCACCAAAATCTCTC 237 | |||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 635 GTTTTGCTCACAATGAAGTCTTTGAAGCTGCAGAGGCCTATCTAGCCACCAAGATCTCTC 694 Query 238 CTTCTAACaaaaaaaTTAAAGTGAGTAAACACCAGAAAGAAAA-AAGCTACAACGTCACC 296 |||||||||||| ||| |||||||||||||| |||||||||| || |||||| |||||| Sbjct 695 CTTCTAACAAAAGAATCAAAGTGAGTAAACATGAGAAAGAAAACAA-CTACAATGTCACC 753 Query 297 GTGGAACGTGATGAGGAAGTTGTGGACACTTTCAATGGCGTCCAGTTCCGGTGGGTCCTC 356 ||||| ||||| || |||||||| ||||| | |||||||||| | |||| |||| ||||| Sbjct 754 GTGGAGCGTGACGAAGAAGTTGTTGACACCTACAATGGCGTCAAATTCCAGTGGATCCTC 813 Query 357 CGTTGTTGCCATGTTGAGTCCAAG-A-AT-CA-AA---AC----TCCAAA--GC-CA--- 399 | |||| | ||||| ||||||||| | | || || || || ||| | || Sbjct 814 CATTGTCGTCATGTCGAGTCCAAGCACTTCCACAACCCACGGGATCTAAACTCCACACTG 873 Query 400 A-ATCAGAGGTCCGATCATTCGAGCTCAACTTCCACAA-ACAATTCAAAGACATAGCTCT 457 | ||| ||||||||||||||||| |||||||||||||| | ||||||||||| ||||||| Sbjct 874 AGATCTGAGGTCCGATCATTCGAACTCAACTTCCACAAGA-AATTCAAAGACGTAGCTCT 932 Query 458 TGAATCTTACTTGCCATTCATGGTGAAAAGAGCAACGTTGATGAAGCAAGAGAAGAAAA- 516 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 933 TGAATCTTACTTGCCATTCATGGTGAAAAGAGCCACGTTGATGAAGCAAGAGAAGAAAAC 992 Query 517 AGCTTAAGATCTTCACTCTC 536 | || ||||||||||||||| Sbjct 993 A-CTCAAGATCTTCACTCTC 1011 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28181356467 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5