BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937958

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50980.1 | Symbols: XERO1 | dehydrin xero 1 | chr3:18941925-...   662    0.0  


> AT3G50980.1 | Symbols: XERO1 | dehydrin xero 1 | chr3:18941925-18942865 
FORWARD LENGTH=640
Length=640

 Score =  662 bits (358),  Expect = 0.0
 Identities = 402/423 (95%), Gaps = 3/423 (1%)
 Strand=Plus/Plus

Query  3    TTCAATTGTAAAAGGAAGATGGAGTCTTACCAAAACCAGTCCGGAGCGCAGCAGACTCAC  62
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  92   TTCAATTGTAAAAGGAATATGGAGTCTTACCAAAACCAGTCCGGAGCGCAGCAGACTCAC  151

Query  63   CAACAGCTTGACCAATTTGGAATTCCATTTCCAGCCACCACCGGAGCCTATGGAACTGCA  122
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  152  CAACAGCTTGACCAATTTGGAAATCCATTTCCAGCCACCACCGGAGCCTATGGAACTGCC  211

Query  123  GGTGGAGCTCCGGTCATGGCGGAAGGTGGTGGTTTGAGTGGCATGCTTCACCGTTCGGGG  182
            ||||||||||| | | |||| |||||||||||||| |||||||||||||||||||| |||
Sbjct  212  GGTGGAGCTCCAGCCGTGGCTGAAGGTGGTGGTTTAAGTGGCATGCTTCACCGTTCTGGG  271

Query  183  AGTAGCTCTAGTTCTAGCTCGGAGGAGGATGGACTAGGTGGAAGGAGGAGGAAGAAGAAG  242
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  272  AGTAGCTCTAGCTCTAGCTCGGAGGATGATGGACTAGGTGGAAGGAGGAGGAAGAAGAAG  331

Query  243  GGAATAACCGAGAAGATTAAAGAGAAGCTGTCGGGCCATCACGAGTCCAACAAGA---CT  299
            |||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||   ||
Sbjct  332  GGAATAACGGAGAAGATTAAAGAGAAGCTGCCGGGTCATCACGACTCCAACAAGACTTCT  391

Query  300  TCTTTAGGTTCTACCACGACGGCCTATGATACCGGCACCGTTCACCACGAGAAGAAAGGC  359
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  TCTTTAGGTTCTACAACGACGGCCTATGATACCGGCACCGTTCACCACGAGAAGAAAGGC  451

Query  360  ATGATGGAGAAGATCAAAGAGAAGCTTCCGGGTGGTCATTATTAGTTTCATTTTAATCAA  419
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  452  ATGATGGAGAAGATCAAAGAGAAGCTTCCGGGTGGTCATCATTAGTTTCATTTTAATTAA  511

Query  420  CTT  422
            |||
Sbjct  512  CTT  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5