BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937965
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51050.1 | Symbols: | FG-GAP repeat-containing protein | ch... 3677 0.0
> AT3G51050.1 | Symbols: | FG-GAP repeat-containing protein |
chr3:18953923-18957956 FORWARD LENGTH=2455
Length=2455
Score = 3677 bits (1991), Expect = 0.0
Identities = 2107/2164 (97%), Gaps = 3/2164 (0%)
Strand=Plus/Plus
Query 1 ATGCAAATCTGCCATTGATACATCTGCTCGAGGTTAGGGCAAAGATGAGGAAACGCGATT 60
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 57 ATGCAAATCTGCCATTGATACATCTGCTTGCGGTTAGGGCAAAGATGAGGAAACGCGATT 116
Query 61 TAGCAATTTTGATGCTCTCTGGATTTGCTATATTCTTCACTCTTCAGCACGAGGGTGATT 120
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGGCTATTTTGATGCTCTCTGGATTTGCTATATTCTTCACTCTTCAGCACGAGGGTGATT 176
Query 121 TTGCGTTCAAAGAAGCATGGTTTCATTTGTATGATGAATACCCAGTCAAATACGAAGCTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTGCGTTCAAAGAAGCATGGTTTCATTTGTATGATGAATACCCAGTCAAATACGAAGCTG 236
Query 181 ATCGTCTCCCACCACCTATTGTAGCTGATCTTAATGGTGATGGAAAGAAGGAGGTTCTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATCGTCTCCCACCACCTATTGTAGCTGATCTTAATGGTGATGGAAAGAAGGAGGTTCTCG 296
Query 241 TTGCTACTAATGATGCCAAAATTCAGGTTCTGGAGCCTCATTCCAGGCGTGTGGATGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGCTACTAATGATGCCAAAATTCAGGTTCTGGAGCCTCATTCCAGGCGTGTGGATGAAG 356
Query 301 GTTTTAGTGAAGCACGTGTTCTTGCAGAGATCCCCCTTTTGCCTGACAAGATCCGTATTG 360
||||||||||||||||||||||||| || ||| | ||||||||||||||||||||| |||
Sbjct 357 GTTTTAGTGAAGCACGTGTTCTTGCGGAAATCACTCTTTTGCCTGACAAGATCCGTGTTG 416
Query 361 CATCAGGGAGACGTGCTGTGGCCATGGCCACAGGTGTTATTGATAGGTACTATAAAGATG 420
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 CGTCAGGGAGACGTGCTGTGGCCATGGCCACAGGTGTTATTGATAGGTACTATAAAAATG 476
Query 421 GAACTCCACAGAAGCAGGTTGTGGTCGTTGTTACCTCAGGTTGGTCTGTGCTCTGCTTTG 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAACTCCCCAGAAGCAGGTTGTGGTCGTTGTTACCTCAGGTTGGTCTGTGCTCTGCTTTG 536
Query 481 ATCACAACCTGAAAAAGCTGTGGGAAACGAATCTGCAGGAGGATTTCCCACATAATGCAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATCACAACCTGAAAAAGCTGTGGGAAACGAATCTGCAGGAGGATTTCCCACATAATGCAC 596
Query 541 ACCATAGAGAGATAGCAATTTCGATTAGCAATTACACATTGAAGCATGGTGATACGGGTT 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 ACCATAGAGAGATAGCAATTTCGATAAGCAATTACACATTGAAGCATGGTGATACGGGTT 656
Query 601 TAGTTATTGTTGGCGGACGGATGGAGATGCAGCCATATAATCACATGGACCCATTTGAGG 660
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGGTTATTGTTGGTGGACGGATGGAGATGCAGCCATATAATCACATGGACCCATTTGAGG 716
Query 661 AACTTGGCATGACAGCACAAAATGCTGAGCAACACAGAAGAAGTGCTACTGAGAATCAGG 720
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 AACTTGGCATGACAGCACAAAATGCTGATCAACACAGAAGAAGTGCTACTGAGAATCAGG 776
Query 721 CCTCTGAAGATTCTGGAGCGATAAACTTGCGTCACTTTTCTGTCTATGCATTTGCTGGCA 780
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CCTCTGAAGATTCTGGAGCCATAAACTTGCGTCACTTTTCTGTCTATGCATTTGCTGGCA 836
Query 781 AGACTGGCCTTCTACGATGGAGAAAAAAGACGGATGATGTTGAAGCTCACACCTCAGATG 840
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 837 AGACTGGCCTTCTTCGATGGAGTAAAAAGACTGATGATGTTGAAGCTCACACCTCAGATG 896
Query 841 CATCACAACTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTC 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CATCACAATTAATTCCACAACACAATTACAAGCTTGATGTGCATGCTCTAAATAGCCGTC 956
Query 901 ACCCAGGAGAGTTTGAGTGCAGGGAATTTAGAGAATCAATTCTTAGTGTCATGCCCCATC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACCCAGGAGAGTTTGAGTGCAGGGAATTTAGAGAATCAATTCTTAGTGTCATGCCCCATC 1016
Query 961 ACTGGGACCGACGTGAAGATACATTATTGAAGCTTGCTCATTTCAGGCGACATAAGAGGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1017 GCTGGGACCGACGTGAAGATACATTATTGAAGCTTGCTCATTTCAGGCGACACAAGAGGA 1076
Query 1021 AAACATTGAAGAAGCAGGCTGGTAGTAAGTCTACAGCATATCCGTTTCACAAACCTGAGG 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1077 AAACATTGAAGAAGCAGGCTGGTAGTAAGTCTACAGCTTATCCGTTTCACAAACCTGAGG 1136
Query 1081 AACACACACCCGCTGGAAAGGACTTGTCAAGAAAGATTCCAAAATTGATTGGAAAGGCTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AACACACACCCGCTGGAAAGGACTTGTCAAGAAAGATTCCAAAATTGATTGGAAAGGCTG 1196
Query 1141 CACGCTATGCTGGCTCGGCAAAACCCAAGAAGGGTATGCAATACATTCCGACTATAACTA 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1197 CACGCTATGCTGGCTCGGCAAAACCCAAGAAGGGTATGCAATACATTCCGACGATAACTA 1256
Query 1201 ATTACACGAAGCTTTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAAGGAAGGAATTG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATTACACGAAGCTTTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAAGGAAGGAATTG 1316
Query 1261 AAGCTATTCATTTGCCTACTGGTCGAACACTTTGCAAGCTTTCTCTACTTGAAGGTGGAC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AAGCTATTCATTTGCCTACTGGTCGAACACTTTGCAAGCTTTCTCTACTTGAAGGTGGAC 1376
Query 1321 TTCACGCCGACATAAACGGAGATGGTGTACTCGATCATGTCCAGACTGTTGGAGGCAATG 1380
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1377 TTCACGCCGACATAAACGGAGATGGTGTTCTCGATCATGTCCAGACTGTCGGAGGCAATG 1436
Query 1381 TTGGAGAGAGAACTGTAGTGAGCGGATCAATGGAAGTGTTGAAGCCTTGCTGGGCAGTGG 1440
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1437 TTGGAGAGAGAACTGTAGTGAGCGGGTCAATGGAAGTGTTGAAGCCTTGCTGGGCAGTGG 1496
Query 1441 CAACCTCAGGTGTTCCCATCCGCGAACAGCTCTTCAACGTCTCGATCTGCCATCACTCCC 1500
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1497 CAACCTCAGGCGTTCCCATCCGGGAACAGCTCTTTAACGTCTCGATCTGCCATCACTCCC 1556
Query 1501 CTTTCAACTTCTTGCACTATGGAGGTGATTATTCACGACACTTCGCCCAGGCAAGAGACA 1560
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1557 CTTTTAACTTCTTGCACTATGGAGGAGATTACTCACGACACTTCGCCCAGGCAAGAGACA 1616
Query 1561 CCTCTACTCTGGAGATCGCAACTCCCATTCTCATCCCCAGAGATGATGGACACAAACACC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CCTCTACTCTGGAGATCGCAACTCCCATTCTCATCCCCAGAGATGATGGACACAAACACC 1676
Query 1621 GCAGAGGAAGTCACGGAGATGTAATCTTCTTAACAAACCGTGGAGAGGTGACATCATACA 1680
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1677 GCAAAGGCAGTCACGGAGATGTAATCTTCTTGACAAACCGTGGAGAGGTGACATCATACA 1736
Query 1681 CGCCTGATGTGCACGGCCACGACGCCGTCTGGCAATGGCAGCTTCAGACAGAAGCCACAT 1740
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1737 CGCCTGATGTGCACGGCCACGACGCAGTCTGGCAATGGCAGCTTCAGACAGAAGCCACAT 1796
Query 1741 GGTCGAATCTCCCGTCTCCATCGGGTTTAACTGAATCAGGGACTGTGGTCCCAACCCTGA 1800
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1797 GGTCGAATCTCCCGTCTCCATCGGGTTTAACTGAATCAGGGACGGTGGTCCCAACCCTGA 1856
Query 1801 AACCGTTCTCGTTGCGCATTCATGATAACCAGCCTATGATCCTTGCCGGAGGAGATCAAG 1860
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1857 AACCATTCTCGTTGCGCATTCATGATAACCAGCCTATGATCCTTGCCGGGGGAGATCAAG 1916
Query 1861 CAGCAGTCATCATCTCTCCGGGAGGAAGCATATTAGCTTCCATCGAGTTACCGTCTCAGC 1920
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1917 CAGCGGTCATCATCTCTCCGGGAGGAAGCATATTGGCTTCCATCGAATTACCGTCTCAAC 1976
Query 1921 CGACTCATGCACTTATCACTGACGACTTCTCGAACGATGGTCTAACGGATGTGATTGTGA 1980
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1977 CGACTCATGCACTTATCACTGATGACTTCTCGAACGATGGTCTAACGGATGTGATTGTGA 2036
Query 1981 TGACATCAAATGGGGTTTACGGGTTCGTTCAAACCAGACAGCCAGGGGCTCTGTTCTTCA 2040
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2037 TGACCTCAAATGGGGTTTACGGGTTTGTTCAAACCAGACAGCCAGGGGCTCTGTTCTTCA 2096
Query 2041 GTTCGTTGGTGGGTTGTCTCTTAGTAGTAATGGCAGTTATTTTCGTTACTCAACACTTAA 2100
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2097 GTTCGTTGGTGGGTTGTCTCTTAGTAGTTATGGCAGTTATTTTCGTTACTCAGCACTTAA 2156
Query 2101 ACTCCATTCAAGGTAAGCCCCGACCTTCATCTAGCTTTTAATTGAAAAC-CGCATAGAGT 2159
||||||||||||||||||| ||||| |||||||||||||||| |||| | || ||||||
Sbjct 2157 ACTCCATTCAAGGTAAGCCTCGACCATCATCTAGCTTTTAATAGAAATCTCG--TAGAGT 2214
Query 2160 TTTC 2163
||||
Sbjct 2215 TTTC 2218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107278564665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5