BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937966
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51060.1 | Symbols: STY1, SRS1 | Lateral root primordium (LR... 1797 0.0
AT5G33210.1 | Symbols: SRS8 | SHI-related sequence 8 | chr5:124... 442 4e-123
AT2G21400.1 | Symbols: SRS3 | SHI-related sequence3 | chr2:9158... 76.8 4e-13
> AT3G51060.1 | Symbols: STY1, SRS1 | Lateral root primordium (LRP)
protein-related | chr3:18964344-18966405 FORWARD LENGTH=1650
Length=1650
Score = 1797 bits (973), Expect = 0.0
Identities = 1106/1166 (95%), Gaps = 25/1166 (2%)
Strand=Plus/Plus
Query 2 GGTGGTGGTTG-TG-C-TGGTGAATGGCGGGGTTTTTCTCGCTAGACGGTGGTGGAGGAG 58
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTGGTGGTTGTTGTCTTGGTGAATGGCGGGGTTTTTCTCGCTAGACGGTGGTGGAGGAG 299
Query 59 GAGGCGGAGGTGGAGGAAACAACCAAGAAGATCACCGGAGCAACACAAACCCTCCTCCGC 118
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GAGGCGGAGGTGGAGGTAACAACCAAGAAGATCACCGGAGCAACACAAATCCTCCTCCGC 359
Query 119 CTGTATCAGAAGCTTGGCTCTGGTATAGAAA-CC---C--TAACGCAAACGCAAACACAA 172
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 360 CTGTATCAGAAGCTTGGCTCTGGTATAGAAACCCTAACGTTAACGCAAACGCAAACACAA 419
Query 173 ACG-T-----AAACGCTCCTTCTTCTTCAAACGCTGCTTTAGGAACACTTGAGTTATGGC 226
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 ACGTTAACGCAAACGCTCCTTCTTCGTCAAACGCTGCTTTAGGAACACTTGAGTTATGGC 479
Query 227 AAAACCACAATCAGCAAGAAATCATGTTTCAGCATCAGCAACATCAACAAAGGTTGGATC 286
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 480 AAAACCACAATCAGCAAGAGATCATGTTTCAGCATCAGCAACATCAGCAAAGGTTGGATC 539
Query 287 TTTACTCTTCCGCCGCAGGTTTAGGTGTTGGACCAAGTAATCATAACCAATTCGATATCT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTACTCTTCCGCCGCAGGTTTAGGTGTTGGACCAAGTAATCATAACCAATTCGATATCT 599
Query 347 CCGGCGAAACTTCAACCGCCGGCGCCGGAAGAGCTGCGGCGATGATGATGATTCGTAGTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCGGCGAAACTTCAACCGCCGGCGCCGGAAGAGCTGCGGCGATGATGATGATTCGTAGTG 659
Query 407 GTGGCGCCggaggaggaggaggaggaAGTGGTGGTGTGAGCTGTCAAGACTGTGGGAATC 466
|| | | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GT-------G-GTA-GCGGAGGAGGAAGTGGTGGTGTGAGCTGTCAAGACTGTGGGAATC 710
Query 467 AAGCGAAGAAAGATTGTGCTCACATGAGGTGTAGAACTTGTTGTAAGAGCCGTGGCTTCG 526
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 711 AAGCGAAGAAAGATTGTTCTCACATGAGGTGTAGAACTTGTTGTAAAAGCCGTGGCTTCG 770
Query 527 AGTGTCCTACTCACGTGAGAAGCACGTGGGTTCCTGCTGCTAAACGCCGTGAGAGACAAC 586
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 771 AGTGTTCTACTCACGTGAGAAGCACGTGGGTCCCTGCTGCTAAACGCCGTGAGAGACAAC 830
Query 587 AGCAACTAGCTACGGTTCAGCCGCAAACGCAGCTACCACGCGGTGAGAGCGTTCCTAAAC 646
||||| |||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct 831 AGCAATTAGCTACGGTCCAGCCTCAAACTCAGCTGCCTCGCGGTGAGAGCGTTCCTAAAC 890
Query 647 GCCACCGTGAGAATTTACCGGCAACTTCTTCATCTCTTGTCTGCACTCGTATACCTTCTC 706
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 891 GCCACCGTGAAAATTTACCGGCAACTTCATCGTCTCTTGTCTGCACTCGCATACCTTCTC 950
Query 707 ATTCAGGGCTAGAAGTTGGGAATTTCCCGGCGGAGGTGAGTTCATCAGCAGTGTTTAGAT 766
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 951 ATTCAGGGCTAGAAGTTGGCAATTTCCCGGCGGAGGTGAGTTCATCGGCGGTGTTTAGGT 1010
Query 767 GCGTGCGTGTGAGCTCAGTAGAAGATGGAGAAGAAGAATTTGCTTACCAAACAGCCGTAA 826
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1011 GCGTGCGTGTGAGCTCAGTAGAAGATGGAGAAGAAGAGTTTGCTTACCAAACAGCTGTAA 1070
Query 827 GCATCGGGGGTCACATTTTCAAAGGCATTCTATACGACCTCGGTCCTGGAAGTAGTGGTG 886
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1071 GCATTGGTGGTCACATTTTCAAAGGCATTTTATACGACCTCGGTCCTGGAAGTAGTGGTG 1130
Query 887 GCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTCTGGTGGTGGTGGAGCTCAAC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTCTGGTGGTGGTGGAGCTCAAC 1190
Query 947 AGCTGAATCTCATAACAGCTGGCTCTGTAACGGTTGCTACCGCTTCTTCCTCTACTCCAA 1006
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1191 AGCTGAATCTCATAACAGCTGGCTCTGTAACCGTTGCTACCGCTTCTTCCTCTACTCCAA 1250
Query 1007 ACCTCGGTGGTATTGGCAGCTCATCCGCCGCCGCAGCCACGTACATTGATCCAGCCGCTC 1066
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1251 ACCTCGGTGGTATTGGCAGCTCATCAGCCGCGGCAGCCACGTACATTGATCCAGCCGCTC 1310
Query 1067 TTTATCCAACTCCGATCAATACATTCATGGCCGGTACACAATTCTTTCCCAACCCAAGAT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TTTATCCAACTCCGATCAATACATTCATGGCCGGTACACAATTCTTTCCCAACCCAAGAT 1370
Query 1127 CGTGATGAAAATCTGACATAAA-GCA 1151
| ||| |||||||||||||||| |||
Sbjct 1371 CATGAGGAAAATCTGACATAAAAGCA 1396
> AT5G33210.1 | Symbols: SRS8 | SHI-related sequence 8 | chr5:12465057-12465713
REVERSE LENGTH=522
Length=522
Score = 442 bits (239), Expect = 4e-123
Identities = 272/288 (94%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 427 ggaggaAGTGGTGGTGTGAGCTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTG-TGC 485
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 133 GGAGGAAGTGGTGGTGTGAGCTGTCAAGACTTTGGGAATCAAGCGAAGAAAGATTGCT-C 191
Query 486 TCACATGAGGTGTAGAACTTGTTGTAAGAGCCGTGGCTTCGAGTGTCCTACTCACGTGAG 545
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 192 TCACATGAGGTGTAGAACTTGTTGTAAGAGCCGTGGCTTCGAGTGTTCTACTCACGTGAG 251
Query 546 AAGCACGTGGGTTCCTGCTGCTAAACGCCGTGAGAGACAACAGCAACTAGCTACGGTTCA 605
||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 252 AAGCACGTGGGTTCCTGCTACTAAACGCCGTGAGAGACAACAACAATTAGCTACGGTTCA 311
Query 606 GCCGCAAACGCAGCTACCACGCGGTGAGAGCGTTCCTAAACGCCACCGTGAGAATTTACC 665
||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GCCTCAAACTCAGCTGCCTCGCGGTGAGAGCGTTCCTAAACGCCACCGTGAGAATTTACC 371
Query 666 GGCAACTTCTTCATCTCTTGTCTGCACTCGTATACCTTCTCATTCAGG 713
||||||||| || ||||| ||||||||||| ||||||| |||||||||
Sbjct 372 GGCAACTTCATCGTCTCTAGTCTGCACTCGCATACCTTTTCATTCAGG 419
> AT2G21400.1 | Symbols: SRS3 | SHI-related sequence3 | chr2:9158390-9159701
FORWARD LENGTH=685
Length=685
Score = 76.8 bits (41), Expect = 4e-13
Identities = 95/120 (79%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 448 TGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTGC-TCACATGAGGTGTAGAACTTG 506
||| |||| |||||||||||||||||||||||||||| | ||||||| || ||||||||
Sbjct 25 TGTGAAGATTGTGGGAATCAAGCGAAGAAAGATTGTGTGT-ACATGAGATGCAGAACTTG 83
Query 507 TTGTAAGAGCCGTGGC-TTCGAGTGTCCTA-CTCACGTGA-GAAGCACGTGGGTTCCTGC 563
|| || | || || ||| | || || | ||||| | | || |||| |||||||||||
Sbjct 84 CTGCAA-ATCCAAAGCCTTCCATTG-CCAAACTCACATCAAGA-GCACTTGGGTTCCTGC 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56475613125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5