BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937978
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossm... 1772 0.0
AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1 |... 966 0.0
> AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossmann-fold
superfamily protein | chr3:19007010-19008427 REVERSE
LENGTH=1418
Length=1418
Score = 1772 bits (959), Expect = 0.0
Identities = 1107/1176 (94%), Gaps = 19/1176 (2%)
Strand=Plus/Plus
Query 2 CCAGATCCGAAAACCCAACAATGGCGTCAGAGAACAACGGATCCAGATCCGAATCCGAAT 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 55 CCAGATCCGAAAACCCAACAATGGCGTCAGAGAACAACGGATCCAGATCCGATTCCGAAT 114
Query 62 CCATCACCAAAGCTGATTCCACCGTCGTTGAAATGCCGCCATCG--CAACCGAGGAAGAT 119
|||||||| || | ||| | | || || || || ||| |||||||||||||
Sbjct 115 CCATCACC---GC---TCCCAAAG-C--TG--ATTCCACCGTCGTTGAACCGAGGAAGAT 163
Query 120 AGCTCTGATCACCGGAATCACCGGCCAAGACGGATCGTATCTGACGGAGTTGCTTCTCGG 179
||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct 164 AGCTCTGATCACCGGAATCACCGGCCAGGACGGATCATACCTGACGGAGTTCCTTCTCGG 223
Query 180 AAAAGGCTACGAAGTTCATGGCCTGATCCGTCGATCATCGAATTTCAACACTCAGCGACT 239
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 224 AAAAGGCTACGAAGTTCATGGTCTGATCCGTCGATCATCGAATTTCAACACCCAGCGAAT 283
Query 240 CAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAAGCTCCACTACGC 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 284 CAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAAACTCCACTACGC 343
Query 300 CGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGCTCGATGTGATCAAGCCTGACGAAGT 359
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 344 CGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGATCGATGTGATCAAACCTGACGAAGT 403
Query 360 CTATAACCTAGCCGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCCTGATTACACAGC 419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TTATAACCTAGCTGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCCTGATTACACAGC 463
Query 420 CGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATCTCACACCATCGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATCTCACACCATCGA 523
Query 480 CAGTGGCCGGTTT-GTCAAGTATTACCAAGCTGGATCTTCGGAGATGTTTGGATCAACTC 538
||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 524 CAGTGGCCG-TACCGTCAAGTATTACCAAGCCGGATCTTCGGAGATGTTTGGATCAACTC 582
Query 539 CTCCTCCACAATCGGAGACGACGCCGTTTCATCCCAGATCGCCTTACGCAGCTTCCAAAT 598
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 583 CTCCTCCACAATCGGAGACGACGCCGTTTCACCCCAGATCTCCTTACGCAGCTTCCAAAT 642
Query 599 GCGCTGCTCATTGGTACACAGTGAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACG 658
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 643 GCGCTGCTCATTGGTACACAGTGAATTACAGAGAGGCGTACGGTCTCTTCGCTTGTAACG 702
Query 659 GAATCTTGTTCAACCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCA 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GAATCTTGTTCAATCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCA 762
Query 719 CAAGAGCATTGGGACGTATCAAGGTTGGTTTGCAGACGAAGCTCTTCCTTGGGAATTTGC 778
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 763 CAAGAGCATTGGGAAGGATCAAGGTTGGTTTGCAGACGAAGCTATTCCTTGGGAATTTGC 822
Query 779 AAGCGTCAAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGC 838
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 823 AAGCGTCAAGAGATTGGGGATTTGCAGGAGATTATGTGGAAGCAATGTGGTTGATGTTGC 882
Query 839 AGCAAGAGAAGCCAGATGATTACGTTGTTGCAACAGAGGAAGCACATACAGTGGAAGAGT 898
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 883 AGCAAGAGAAGCCAGATGATTACGTTGTGGCAACAGAGGAAGGACACACAGTGGAAGAGT 942
Query 899 TTCTTGATGTGTCATTTGGGTATTTGGGACTCGATTGGAA-GAATCATGTTGAGATTGAC 957
|||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||
Sbjct 943 TTCTTGATGTGTCATTTGGGTATTTGGGACTCAATTGGAAAGATT-ATGTTGAGATTGAC 1001
Query 958 CCGAGGTACTTTAGGCCAT-CTGAAGTAGATAACCTTCAAGGAGATGCAAGCAAGGCAAA 1016
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CAGAGGTACTTTAGGCC-TGCTGAAGTAGATAACCTTCAAGGAGATGCAAGCAAGGCAAA 1060
Query 1017 GGAAGTGTTGGGATGGAAACCAAAAGTAGGGTTTGAGACGCTGGTGAAGATGATGGTTGA 1076
|||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1061 GGAAGTGTTGGGGTGGAAACCACAAGTAGGGTTTGAGAAGCTTGTGAAGATGATGGTTGA 1120
Query 1077 TGAAGATCTTGCCCTTGCTAATAGGGAGAAACTGCTTGTTGATGCTGGTTACATGGATGC 1136
||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 1121 TGAAGATCTTGAGCTTGCTAAGAGGGAGAAAGTGCTTGTTGATGCTGGATACATGGATGC 1180
Query 1137 TAAGCAGCAACCTTGATTTGATCTATTATACAGAGA 1172
||||||||||||||||||||||| |||||||| |||
Sbjct 1181 TAAGCAGCAACCTTGATTTGATCAATTATACAAAGA 1216
> AT5G66280.1 | Symbols: GMD1 | GDP-D-mannose 4,6-dehydratase 1
| chr5:26476166-26477754 FORWARD LENGTH=1589
Length=1589
Score = 966 bits (523), Expect = 0.0
Identities = 879/1053 (83%), Gaps = 16/1053 (2%)
Strand=Plus/Plus
Query 109 CCGAGGAAGATAGCTCTGATCACCGGAATCACCGGCCAAGACGGATCGTATCTGACGGAG 168
||||||||||| || ||| ||||||||||||| |||||||| ||||| || ||||| |||
Sbjct 311 CCGAGGAAGATTGCACTGGTCACCGGAATCACTGGCCAAGATGGATCTTACCTGACCGAG 370
Query 169 TTGCTTCTCGGA-AAAGGCTACGAAGTTCATGGCCTGATCCGTCGATCATCGAATTTCAA 227
|| || ||| || ||||||||||||||||| ||||| ||||| ||||| || ||||| ||
Sbjct 371 TTCCTGCTC-GAGAAAGGCTACGAAGTTCACGGCCTCATCCGACGATCCTCCAATTTTAA 429
Query 228 CACTCAGCGACTCAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAA 287
||||||||||||||||||||||||| | ||||| ||||| |||||||||||||| |||||
Sbjct 430 CACTCAGCGACTCAACCATATCTACGTTGATCCCCACAACGTCAACAAAGCTCTCATGAA 489
Query 288 GCTCCACTACGCCGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGCTCGATGTGATCAA 347
||||||||||| |||||| | || || ||||| ||||| ||||||||||| || |||||
Sbjct 490 GCTCCACTACGGTGATCTCTCTGATGCCTCCTCCCTCCGCCGTTGGCTCGACGTCATCAA 549
Query 348 GCCTGACGAAGTCTATAACCTAGCCGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCC 407
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct 550 GCCTGACGAGGTCTACAACCTTGCTGCTCAGTCCCACGTTGCCGTCTCCTTCGAGATCCC 609
Query 408 TGATTACACAGCCGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATC 467
||||||||| || || || ||||| || || ||||| |||||||| || || ||||||||
Sbjct 610 TGATTACACTGCTGACGTTGTCGCTACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATC 669
Query 468 TCACACCATCGACAGTGGCCG-GTTTGTCAAGTATTACCAAGCTGGATCTTCGGAGATGT 526
||||| ||| |||| |||||| | ||||||| ||||| ||||| |||||||||||||
Sbjct 670 TCACAACATTGACAATGGCCGCG-CCATCAAGTACTACCAGGCTGGCTCTTCGGAGATGT 728
Query 527 TTGGATCAACTCCTCCTCCACAATCGGAGACGACGCCGTTTCATCCCAGATCGCCTTACG 586
| || |||||||||||||| || || ||||| ||||| || ||||| ||||| || ||||
Sbjct 729 TCGGGTCAACTCCTCCTCCGCAGTCAGAGACCACGCCCTTCCATCCGAGATCTCCCTACG 788
Query 587 CAGCTTCCAAATGCGCTGCTCATTGGTACACAGTGAATTACCGAGAAGCGTACGGTCTCT 646
| || ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
Sbjct 789 CTGCGTCCAAATGCGCTGCTCATTGGTACACAGTCAATTACCGAGAGGCCTACGGTCTGT 848
Query 647 TCGCATGTAACGGAATCTTGTTCAACCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGA 706
||| || ||||||||| | ||||||||||||||||||||| | || ||||| |||||||
Sbjct 849 ACGCCTGCAACGGAATCCTCTTCAACCACGAGTCACCTCGCAGAGGCGAGAACTTCGTGA 908
Query 707 CGAGGAAGATCACAAGAGCATTGGGACGTATCAAGGTTGGTTTGCAGACGAAGCTCTTCC 766
| |||| ||||| | || |||||| | |||||||| || |||||||| ||||||||||
Sbjct 909 CTCGGAAAATCACTCGGGCCTTGGGAAGGATCAAGGTCGGATTGCAGACCAAGCTCTTCC 968
Query 767 TTGGGAATT-TGCAAGCGTCAAGAGATTGGGGATTT-GCAGGAGACTATGTGGAAGCAAT 824
| ||||| | | || || |||||||| ||||| ||| ||||||||||| |||||||||||
Sbjct 969 T-GGGAAATATACAGGCTTCAAGAGACTGGGG-TTTCGCAGGAGACTACGTGGAAGCAAT 1026
Query 825 GTGGTTGATGTTGCAGCAAGAGAAGCCAGATGATTACGTTGTTGCAACAGAGGAAGCACA 884
|||| ||||| ||||||| ||||| |||||||| || || |||||||| |||||| ||||
Sbjct 1027 GTGGCTGATGCTGCAGCAGGAGAAACCAGATGACTATGTGGTTGCAACTGAGGAATCACA 1086
Query 885 TACAGTGGAAG-AGTTTCTTGATGTGTCATTT-GGGTATTTGGGACTCGATTGGAA-GAA 941
|| || ||| ||||||| || ||||| ||| ||||| |||| ||| | ||||| ||
Sbjct 1087 CACCGTC-AAGGAGTTTCTGGACGTGTC-TTTCGGGTACGTGGGGCTCAACTGGAAAGAC 1144
Query 942 TCATGTTGAGATTGACCCGAGGTACTTTAGGCC-ATCTGAAGTAGATAACCTTCAAGGAG 1000
||||| ||||| ||| |||||||| |||| | | || || || || || ||||||
Sbjct 1145 -CATGTCGAGATCGACAAAAGGTACTTCCGGCCCA-CGGAGGTCGACAATCTGAAAGGAG 1202
Query 1001 ATGCAAGCAAGGCAAAGGAAGTGTTGGGATGGAAACCAAAAGTAGGGTTTGAGACGCTGG 1060
| |||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||||
Sbjct 1203 ACGCAAGCAAGGCAAAGGAAATGTTGGGGTGGAAGCCAAAAGTAGGGTTCGAGAAGCTGG 1262
Query 1061 TGAAGATGATGGTTGATGAAGATCTTGCCCTTGCTAATAGGGAGAAACTGCTTGTTGATG 1120
||||||||||||| || ||||| |||| || || || ||||||||| |||| | || |
Sbjct 1263 TGAAGATGATGGTGGACGAAGACCTTGAGCTGGCCAAGAGGGAGAAAGTGCTCGCCGACG 1322
Query 1121 CTGGTTACATGGATGCTAAGCAGCAACCTTGAT 1153
||||||||||||| ||| |||||||||||||||
Sbjct 1323 CTGGTTACATGGACGCTCAGCAGCAACCTTGAT 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5