BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937986
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51260.1 | Symbols: PAD1 | 20S proteasome alpha subunit PAD... 1240 0.0
AT5G66140.1 | Symbols: PAD2 | proteasome alpha subunit D2 | chr... 765 0.0
> AT3G51260.1 | Symbols: PAD1 | 20S proteasome alpha subunit PAD1
| chr3:19030995-19033064 FORWARD LENGTH=1162
Length=1162
Score = 1240 bits (671), Expect = 0.0
Identities = 751/790 (95%), Gaps = 3/790 (0%)
Strand=Plus/Plus
Query 10 AAAGGTAAAAGATGGCGAGATACGATCGAGCAATCACTGTATTTTCTCCCGACGGCCACC 69
||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 81 AAAGGTAAAAGATGGCGAGATACGATCGAGCAATCACTGTATTCTCCCCCGATGGTCACC 140
Query 70 TATTTCAGGTGGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCC 129
| || || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCTTCCAAGTAGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCC 200
Query 130 GCGGCACCGATACTGTCGTCCTCGCCGTCGAGAAGAAATCCACCCCTAAGCTCCAGGATT 189
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 201 GCGGCACAGATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATT 260
Query 190 CTAGATCAGCTAGAAAGATAGTGAGTCTTGATAATCACATTGCGTTGGCCTGCGCTGGAC 249
| |||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 261 CCAGATCAGCAAGGAAGATAGTGAGCCTTGATAATCACATTGCATTGGCCTGTGCTGGAC 320
Query 250 TTAAGGCAGATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGC 309
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TGAAAGCAGATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGC 380
Query 310 TTACGTTGGAGGACCCAGTGACTGTTGAGTACATCACGCGTTACATAGCAGGGCTTCAAC 369
||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||
Sbjct 381 TTACGTTGGAGGACCCAGTTACTGTTGAGTACATTACTCGGTACATAGCAGGGCTTCAAC 440
Query 370 AGAAGTATACTCAGAGTGGTGGTGTGAGACCTTTTGGTCTTTCCACTCTTATTGTTGGGT 429
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 441 AGAAGTATACTCAAAGTGGTGGTGTGAGGCCTTTTGGTCTTTCCACTCTTATTGTTGGGT 500
Query 430 TTGATCCCTACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACTTTCTCTG 489
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 501 TTGATCCCTACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACATTCTCTG 560
Query 490 CTTGGAAGGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAA 549
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAA 620
Query 550 ACTACAAAGAATGCTCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGG 609
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ACTACAAAGAAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGG 680
Query 610 TAGTTGAGAGCGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGAAGGTG 669
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 681 TTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAG--G-TG 737
Query 670 TTCTGAAGCAACTAGAAGAAGAAGAAATTGATATTATTGTGGCTGAGATTGAAGCAGAGA 729
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 738 TTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGGCTGAGATCGAAGCAGAGA 797
Query 730 AGGCTGCAGCAGAAGCGGCCAAGAAAGGCCCTGCGAAGGAAACATGAACAAGATCTTACA 789
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 798 AGGCTGCAGCTGAAGCAGCCAAGAAAGGCCCTGCGAAGGAAACATGAACCAGATCTTAAA 857
Query 790 GTAGCGGTCT 799
||||||||||
Sbjct 858 GTAGCGGTCT 867
> AT5G66140.1 | Symbols: PAD2 | proteasome alpha subunit D2 | chr5:26437170-26438764
REVERSE LENGTH=1115
Length=1115
Score = 765 bits (414), Expect = 0.0
Identities = 649/763 (85%), Gaps = 13/763 (2%)
Strand=Plus/Plus
Query 19 AGATGGCGAGATACGATCGAGCAATCACTGTATTTTCTCCCGACGGCCACCTATTTCAGG 78
||||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||| |
Sbjct 86 AGATGGCTAGATACGATCGAGCAATTACTGTCTTCTCCCCCGACGGTCACCTCTTTCAAG 145
Query 79 TGGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACCG 138
| || || ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 146 TCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCG 205
Query 139 ATACTGTCGTCCTCGCCGTCGAGAAGAAATCCACCCCTAAGCTCCAGGATTCTAGATCAG 198
| || || |||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 206 ACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGATCAG 265
Query 199 CTAGAAAGATAGTGAGTCTTGATAATCACATTGCGTTGGCCTGCGCTGGACTTAAGGCAG 258
| ||||| || ||||| ||||| ||||||||||| ||||| ||||| || || ||||| |
Sbjct 266 CCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCGGGGCTCAAGGCTG 325
Query 259 ATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGCTTAC-GTTG 317
|||| || |||||||| ||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 326 ATGCCCGAGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCACAGGCTTACACTT- 384
Query 318 GAGGACCCAGTGACTGTTGAGTACATCACGCGTTACATAGCAGGGCTTCAACAGAAGTAT 377
|||||||| || ||||||||||||||||| || ||||| || || |||||||||||||||
Sbjct 385 GAGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTAT 444
Query 378 ACTCAGAGTGGTGGTGTGAGACCTTTTGGTCTTTCCACTCTTATTGTTGGGTTTGATCCC 437
|| || ||||||||||| ||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct 445 ACCCAAAGTGGTGGTGTCAGACCCTTCGGTCTTTCTACTCTTATCGTTGGCTTTGA-CCC 503
Query 438 -TACACTCGTATACCC-GCGCTTTATCAGACCGATCCATCTGGTACTTTCTCTGCTTGGA 495
||| |||| | ||| | || |||||||| ||||| ||||| ||||||||||||||||
Sbjct 504 TTACTCTCGCCT-CCCTTCCCTATATCAGACTGATCCTTCTGGGACTTTCTCTGCTTGGA 562
Query 496 AGGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAAACTACA 555
| |||||||| || || |||||||| ||||| |||||||| || || ||||| |||||||
Sbjct 563 AAGCTAATGCTACCGGCAGAAACTCCAACTCTATTAGGGAATTCCTCGAGAAGAACTACA 622
Query 556 AAGAATGCTCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGGTAGTTG 615
|||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 623 AAGAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTGCTTGAGGTAGTTG 682
Query 616 AGAGCGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGAA-GGTGTTCTG 674
|||| || |||||||||||||||||||| ||||||||||| |||||| | || | |||
Sbjct 683 AGAGTGGCGGAAAGAACATTGAGGTTGCCGTAATGACACGGGAGGAA-ACTGG-G--CTG 738
Query 675 AAGCAA-CTAGAAGAAGAAGAAATTGATATTATTGTGGCTGAGATTGAAGCAGAGAAGGC 733
|| | |||||||||| ||||||||| || ||||| |||| ||||| || |||||
Sbjct 739 C-GCCAGCTAGAAGAAGCTGAAATTGATGCAATCGTGGCCAAGATCGAAGCTGAAAAGGC 797
Query 734 TGCAGCAGAAGCGGCCAAGAAAGGCCCTGCGAAGGAAACATGA 776
|| |||||||| ||||||||||||||| | |||||||| |||
Sbjct 798 GGCCGCAGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5