BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937990
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51300.1 | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ... 1269 0.0
AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6 ... 616 1e-175
AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-... 416 1e-115
> AT3G51300.1 | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1
| RHO-related protein from plants 1 | chr3:19042887-19044372
FORWARD LENGTH=1061
Length=1061
Score = 1269 bits (687), Expect = 0.0
Identities = 726/745 (97%), Gaps = 1/745 (0%)
Strand=Plus/Plus
Query 1 TTAATAATCTTTGAGGGGAAATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTG 60
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 291 TTAATAAACTTTGAGGGGAAATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTG 350
Query 61 ATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACGAGCAACACTTTCCCTACGG 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 351 ATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGG 410
Query 121 ATTATGTGCCTACCGTTTTCGATAATTTCAGTGCAAATGTGGTTGTTAATGGAAGCACTG 180
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 411 ATTATGTGCCTACCGTTTTCGATAATTTCAGTGCCAATGTTGTGGTTAATGGAAGCACTG 470
Query 181 TGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGA 240
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 471 TGAATCTTGGATTGTGGGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGA 530
Query 241 GTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTTACCGTGGAGCAGATGTTTTCATTTTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATG 590
Query 301 AAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCA 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 591 AAAACGTCTCCAAAAAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCG 650
Query 361 TCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCCTTGTTGGAACAAAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTG 710
Query 421 GCGCTGTCCCGATTACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 480
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 711 GTGCTGTTCCGATTACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA 770
Query 481 CTTACATCGAATGCAGTTCTAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCA 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CTTACATCGAATGCAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCA 830
Query 541 TTCGAGTGGTGTTGCAACCACCGAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCAT 600
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 831 TCCGAGTGGTGTTGCAACCGCCAAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCAT 890
Query 601 GCTCCATTCTATGATGATTGGAAATCTCTGTTTTTATGTATTTGGTTTTGGTATATTAAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GCTCCATTCTATGATGATTGGAAATCTCTGTTTTTATGTATTTGGTTTTGGTATATTAAT 950
Query 661 CTTCTAACAATGAATGAATCAATGTGTTAATGGACAGACACCCAAGTTTGATTGGTCCTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 951 CTTCTAACAATGAATGAATCAATGTGTTAATGGACAGACACCCAAGTTTGACTGGTCCTT 1010
Query 721 TTTTGTTCTTAATATTAATGGAGTT 745
||| |||||||||||||||||||||
Sbjct 1011 TTT-GTTCTTAATATTAATGGAGTT 1034
> AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6
| RAC-like 6 | chr4:17023837-17025863 REVERSE LENGTH=1157
Length=1157
Score = 616 bits (333), Expect = 1e-175
Identities = 514/599 (86%), Gaps = 22/599 (4%)
Strand=Plus/Plus
Query 20 AATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAAC 79
||||||||| || ||||| |||||||||| || ||||||||||||||||| || |||||
Sbjct 349 AATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGCTGTTGGTAAAAC 408
Query 80 TTGTTTGTTGATTTCTTACACGAGCAACA-CTTTCCCTACGGATTATGTGCCTACCGTTT 138
|||||| |||||||||| || ||||||| ||||||| ||||||||||| || || ||||
Sbjct 409 CTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCC-ACGGATTATGTTCCGACTGTTT 467
Query 139 TCGATAA-TTTCAGTGCAAATGTGGTTGTTAATGGAAG-CACTGTGAATCTTGGATTGTG 196
||||||| ||| ||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 468 TCGATAACTTT-AGTGCAAATGTGGTTGTTAATGG-AGCCACGGTGAATCTTGGATTGTG 525
Query 197 GGATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGAGTTACCGTGGAGCAGA 256
||||||||||||||||||||| || |||||||||||||| ||||||||||||| || ||
Sbjct 526 GGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCTGA 585
Query 257 TGTTTTCATT-TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAAA 315
|||||||||| ||| |||||||||| || ||||| || |||||||| || || ||||| |
Sbjct 586 TGTTTTCATTCTTG-CCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGA 644
Query 316 AGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCATCCTTGTTGGAAC-A 374
||||||| || |||||||| || || || ||||||||||| || ||||||||||||| |
Sbjct 645 AGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCA 704
Query 375 AAGCTTGATCTTCGAGATGATAAACAGTTCTTT-ATCGACCATCCTGGCGCTGTCCCGAT 433
|| || |||||||||||||| |||||||| ||| |||||||||||||| |||||||| ||
Sbjct 705 AA-CTAGATCTTCGAGATGACAAACAGTT-TTTCATCGACCATCCTGGTGCTGTCCCTAT 762
Query 434 TACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA-CTTACATCGAAT 492
||| |||| ||| ||||||||||||| ||||| ||| ||||| || | |||||||||| |
Sbjct 763 TACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCC-AGCTTACATCGAGT 821
Query 493 GCAGTTCTAAAA-CTCAAGAGAATGTGAAGG-CGGTGTTTGACGCAGCCATTC-GAGTGG 549
||||||| |||| | |||||||| ||||||| || ||||||| ||||| || | ||||||
Sbjct 822 GCAGTTC-AAAATCACAAGAGAACGTGAAGGGCG-TGTTTGATGCAGCGAT-CAGAGTGG 878
Query 550 TG-TTGCAACCACCGAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCATGCTCCAT 607
| || ||||| || ||||||||||| ||||||| |||||| || ||||| ||||||||
Sbjct 879 TCCTT-CAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCCTGCTCCAT 936
> AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-like
3 | chr4:16672935-16674771 FORWARD LENGTH=1069
Length=1069
Score = 416 bits (225), Expect = 1e-115
Identities = 469/586 (80%), Gaps = 19/586 (3%)
Strand=Plus/Plus
Query 21 ATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACT 80
||||| ||||| |||| | ||||| || || || || || || ||||| ||||| |||
Sbjct 242 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGGAAAGACT 301
Query 81 TGT-TTGTTGATTTCTTACACGAGCAACACTTTCCCTACGGATTATGTGCCTACCGTTTT 139
||| || | || || ||||| |||||||||||||| |||||||||||||| || || ||
Sbjct 302 TGTCTT-CTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTT 360
Query 140 CGATAATTTCAGTGCAAATGTGGTTGTTAATGG-AAGCACTGTGAATCTT-GGATTGTGG 197
||||||||||||||| |||||| ||||| |||| || |||| | || ||| |||||||||
Sbjct 361 CGATAATTTCAGTGCCAATGTGATTGTTGATGGCAA-CACTATCAA-CTTGGGATTGTGG 418
Query 198 GATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGAGTTACCGTGGAGCAGAT 257
|||||||||||||||||||| ||||| ||| ||||||| |||| || || || ||||||
Sbjct 419 GATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGAT 478
Query 258 GTTTTCATT--TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAAA 315
|| ||| || || || ||||| ||| |||| ||||| || |||||||| || || ||||
Sbjct 479 GTCTTC-TTACTT-GCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGTTTCTAAAA 536
Query 316 AGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCATCCTTGTTGGAACAA 375
||||| | || || ||| |||||| || |||||||| ||||||||||| ||||||||||
Sbjct 537 AGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAA 596
Query 376 AGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGGCGCTGTCCCGAT-T 434
|||||||||||||||||||||| || |||||| ||| || ||||| ||||| || || |
Sbjct 597 AGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATCT 656
Query 435 ACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTACTTACATCGAATGC 494
|||| ||||| || || || || | ||||| || || || ||| |||| |||||||||
Sbjct 657 -CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCGCCTGCTTATATCGAATGC 715
Query 495 AGTTCTAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCATTCGAG-TGGTGT- 552
||| | ||||||||| |||||||||| || |||||||| || || || | || | || |
Sbjct 716 AGTGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTGATGCGGCTAT-CAAGGTCGT-TC 773
Query 553 TGCAACCACCGAAG--CA-GAAGAAGAAGAAGAGCAAAGCGCAGAA 595
| || ||||| || || ||||||||||||||| ||| | |||||
Sbjct 774 TCCAGCCACCAAAAAACAAGAAGAAGAAGAAGAGAAAATCTCAGAA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5