BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937992
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51320.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2562 0.0
> AT3G51320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:19049602-19051565 REVERSE LENGTH=1964
Length=1964
Score = 2562 bits (1387), Expect = 0.0
Identities = 1544/1621 (95%), Gaps = 6/1621 (0%)
Strand=Plus/Plus
Query 2 AGCATCCAAGCTGGAGATGAATGGCAAAAGCTTCTTCTATCCGCCAATTCGTCACATCCA 61
||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 101 AGCATTCAAGCTGGAGATGAATGGCAAAAGCTTCCTCTATTCGCCAATTCGTCACATCCA 160
Query 62 GATTCATC-TCCCCCGGAACGGGTCTGCTTAAGGGTTTCAAACTTGTCGAAGATTCCAAC 120
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GATTCATCGT-CCCCGGAACGGGTCTGCTTAAGGGTTTCAAACTTGTCGAAGATTCCAAC 219
Query 121 TCTATTAAACACCTCTTCCAAGTCCACGCGAGGCTAATCACCTCCGGTAACTTCTGGGAT 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TCTATTACACACCTCTTCCAAGTCCACGCGAGGCTAATCACCTCCGGTAACTTCTGGGAT 279
Query 181 TCTTCTTGGGCTATCAGATTGTTGAAGTGTTCTTCGCGTTTTGGTGATTCTAGCTACA-C 239
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 280 TCATCTTGGGCTATCAGATTGTTGAAGTCTTCTTCGCGTTTTGGTGATTCTAGCTACACC 339
Query 240 GCTTTCGATATTCCGCAGCATTGGGAAGCTTTACTGTGCAAATCCCGTCTTTAAGGCTTA 299
| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 340 G-TTTCGATATACCGCAGCATTGGCAAGCTTTACTGCGCAAATCCCGTCTTTAAGGCTTA 398
Query 300 TTTGGTCTCTTCTTCTCCGAAACAAGCGTTGGGGTTTTACTTCGATATACTGAGATTTGG 359
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 399 TTTGGTCTCGTCTTCTCCGAAACAAGCGTTGGGGTTTTACTTCGATATACTAAGATTTGG 458
Query 360 TTTTGTTCCTGATACTTACACCTTCGTTTCATTGGTTAGTTGTATCGAGAAGACTTGTTG 419
||||||||||||| | |||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 459 TTTTGTTCCTGATTCATACACCTTCGTTTCGTTGATTAGTTGTATTGAGAAGACTTGTTG 518
Query 420 CGTTGATTCTGGTAAAATGTGTCATGGGCAGGCTATTAAGCATGGATGCGATCAAGTTTT 479
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 519 CGTTGATTCTGGTAAAATGTGTCATGGGCAAGCCATTAAGCATGGATGCGATCAAGTTTT 578
Query 480 GCCTGTTCAAAATTCGTTAATTCATATGTATACTTGTTGTGGTGCTTTGGATCTTGCAAA 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 579 GCCTGTTCAAAATTCGTTAATGCATATGTATACTTGTTGTGGTGCTTTGGATCTTGCAAA 638
Query 540 GAAGCTGTTTGTTGAAATTCCTAAGAGAGATATTGTGTCCTGGAACTCGATAATCGCTGG 599
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 639 GAAGCTGTTTGTTGAAATTCCTAAGAGAGATATTGTGTCCTGGAACTCTATAATAGCTGG 698
Query 600 GGCGGTGAGGAATGGTGATGTTTTGTATGCTCACAAGTTGTTCGATGAAATGCCTGAGAA 659
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 699 GATGGTGAGGAATGGTGATGTTTTGGCTGCACACAAGTTGTTCGATGAAATGCCTGACAA 758
Query 660 AAACATGATTTCTTGGAATATCATGATTAGCGCTTATTTAGGTGCTAATAATCCCGGAGT 719
|||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 759 AAACATTATTTCTTGGAATATCATGATTAGTGCTTATTTGGGTGCGAATAATCCTGGAGT 818
Query 720 TTCCATTAGTTTGTTCCGTGAGATGGTTGGAGCAGGGTTCCAAGGAAATGAGAGTACATT 779
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 819 TTCCATTAGTTTGTTCCGTGAGATGGTCAGAGCAGGGTTCCAAGGAAATGAGAGTACGTT 878
Query 780 GGTTTTGTTGTTGAATGCTTGTGGCAGATCAGCTAGATTGAAGGAAGGTAGGTCGGTTCA 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 879 GGTTTTGTTGTTGAATGCTTGTGGTAGATCAGCTAGATTGAAGGAAGGTAGGTCGGTTCA 938
Query 840 TGCTTCTTTGATAAGAACCTTTCTGAATTCGAGTGTAGTCATTGATACAGCTCTTATTGA 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 939 TGCTTCTTTGATAAGAACCTTTCTGAATTCGAGTGTAGTTATTGATACAGCTCTTATTGA 998
Query 900 CATGTATGGAAAGTGCAAGGAAGTAGATTTAGCACGTAGGATATTCGATAGTTTATCTGT 959
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 999 CATGTATGGAAAGTGCAAGGAAGTAGGTTTAGCACGTAGGATATTCGATAGTCTATCTAT 1058
Query 960 TAGGAACAAAGTAACGTGGAATGTGATGATATTGGCACATTGTCTTCACGGGCGTCCTGA 1019
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TAGAAACAAAGTTACTTGGAATGTGATGATATTGGCACATTGTCTTCACGGGCGTCCTGA 1118
Query 1020 AGATGGGCTCGAATTATTTGAAGCCATGATCGATGGGT-TGCTTAGACCTGATGAAGTGA 1078
|| ||||||||| |||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct 1119 AGGTGGGCTCGAGTTATTTGAAGCCATGATCAATGG-TATGCTTAGACCCGATGAAGTGA 1177
Query 1079 CATTTGTTGGTGTTCTCTGCGGTTGTGCTAGAGCTGGGCTTGTTTATCAAGGACAAAGTT 1138
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1178 CATTTGTTGGTGTTCTCTGCGGTTGTGCTAGAGCTGGGCTTGTTTCTCAAGGACAAAGTT 1237
Query 1139 ACTACTCCCTGATGGTTGACGAGTTCGAGATCAAACCCAACTTTGGACACCAATGGTGCA 1198
|||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1238 ACTATTCTCTGATGGTTGATGAGTTCCAGATCAAACCCAACTTTGGACACCAATGGTGCA 1297
Query 1199 TGGCTAATCTTTACTCCAACGCCGGGTTCCCTGAAGAAGCAGAGGAAGCTCTGAAGAATC 1258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TGGCTAATCTTTACTCCAGCGCCGGGTTCCCTGAAGAAGCAGAGGAAGCTCTGAAGAATC 1357
Query 1259 TGCCAGAGGAAGATGTGACACCAGAATCTACAAAATGGGCAAACTTGCTCAGCTCGTCGC 1318
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1358 TGCCAGATGAAGATGTGACACCAGAATCTACAAAGTGGGCAAACTTGCTCAGCTCGTCGC 1417
Query 1319 GTTTCACAGTAAACCCGGCTCTAGGGGAGAGGTTTGCCAAGTCCCTGATAGAGACAGATC 1378
|||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1418 GTTTTACAGGAAACCCGACTCTAGGGGAGAGCATTGCCAAGTCCCTGATAGAGACAGATC 1477
Query 1379 CTTTGAACTACAAGTATTACCATTTGCTGATGAACATTTACAGTGTTACGGGAAGGTGGG 1438
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1478 CTTTGAACTACAAGTATTACCATTTGCTGATGAATATTTACAGTGTTACGGGACGGTGGG 1537
Query 1439 AGGATGTTAATAGAGTGAGAGAGGTGGTGAAGGAGAGGAAAATAGGACGAATACCCGGGT 1498
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1538 AGGATGTTAATAGAGTGAGAGAGATGGTGAAGGAGAGGAAAATAGGACGAATACCCGGGT 1597
Query 1499 GTGGCCTTGTGGACTTGGAGGAGATAGTCCATGGCCTTAGACTAGGATGCAAAGAAGCAG 1558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 GTGGCCTTGTGGACTTGAAGGAGATAGTCCATGGCCTTAGACTAGGATGCAAAGAAGCAG 1657
Query 1559 AAAAAGTGATCACTGAGACTAGTCTAGAACAATGGTACAGTGATTCACTGACATAATAAA 1618
|||| ||| |||||||||||||| ||||| |||| ||||||||||||| | |||||||||
Sbjct 1658 AAAAGGTGTTCACTGAGACTAGTTTAGAAAAATGCTACAGTGATTCACCGTCATAATAAA 1717
Query 1619 G 1619
|
Sbjct 1718 G 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5