BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937995

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51330.1 | Symbols:  | Eukaryotic aspartyl protease family p...   219    1e-56
  AT3G51340.1 | Symbols:  | Eukaryotic aspartyl protease family p...   215    2e-55


> AT3G51330.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr3:19053368-19056224 REVERSE LENGTH=1774
Length=1774

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 200/239 (84%), Gaps = 7/239 (3%)
 Strand=Plus/Plus

Query  28    GTTTCGAAGATGAAAGCTTGGAATCTAC--C-ACTCCACCACCAGAGATC-GAAGCTCCT  83
             |||| |||||||||||||||||||| ||  |  ||||||||||||||| | |||||||||
Sbjct  1430  GTTTTGAAGATGAAAGCTTGGAATCAACGACTCCTCCACCACCAGAGA-CTGAAGCTCCT  1488

Query  84    CCACCAAGTGTATCCACGCCACCACCTCTTCTTCCTCCTCCTGCTACTTCTGCTACACCA  143
              |||||||||  ||||| ||   ||||  ||||| ||||||| || || | |||||||| 
Sbjct  1489  TCACCAAGTGCCTCCACTCCGTTACCTAGTCTTCTTCCTCCTCCTGCTGCAGCTACACCT  1548

Query  144   CCCCCGATGGATCCTCGTAACTCTACCAGAAACTCTGGCACAGGCGGTTCAGCCAACCTC  203
             ||||  || || |||||||||||||||||||||||||||||||||  | ||||||| || 
Sbjct  1549  CCCCAAATAGACCCTCGTAACTCTACCAGAAACTCTGGCACAGGCACTGCAGCCAATCT-  1607

Query  204   AG-CCATCTTGCAGCTCAACTCCTACTTCTCCTACCACTTTTGGCCTTCTTCTGACTCA  261
             || || ||| ||| |||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct  1608  AGTCCCTCTCGCATCTCAACTCCTACTTCTCCTACCTCTTTTGGCCTTCCTCTGATTCA  1666


> AT3G51340.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr3:19057013-19060036 REVERSE LENGTH=1841
Length=1841

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 198/234 (85%), Gaps = 20/234 (9%)
 Strand=Plus/Plus

Query  28    GTTTCGAAGATGAAAGCTTGGAATCT-A--C-CACTCCACCACCAGAGATCGAAGCTCCT  83
             |||| |||||||||||||| | |||| |  | | ||||||||||||||||||||||||||
Sbjct  1624  GTTTTGAAGATGAAAGCTTAGCATCTGAGTCTC-CTCCACCACCAGAGATCGAAGCTCCT  1682

Query  84    CCACCAAGTGTATCCACGCCACCACCTCTTCTTCCTCCTCCTGCTACTTCTGCTACACCA  143
             ||||||||||||||||| |||||||||   ||          |||  | |||||||||| 
Sbjct  1683  CCACCAAGTGTATCCACTCCACCACCTG--CT----------GCT--T-CTGCTACACCG  1727

Query  144   CCCCCGATGGATCCTCGTAACTCTACCAGAAACTCTGGCACAGGCGGTTCAGCCAACCTC  203
             ||| | || |||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct  1728  CCCACAATCGATCCTCGTAACTCCACCAGAAACTCTGGCACAGGCGGTGCAGCCAATCTC  1787

Query  204   AGCCATCTTGCAGCTCAACTCCTACTTCTCCTACCACTTTTGGCCTTCTTCTGA  257
             |||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct  1788  AGCCCTCTTGCAGCTCAACTCCTATTTCTCCTACCACTTTTGGCTTTCCTCTGA  1841



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5