BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937996
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51330.1 | Symbols: | Eukaryotic aspartyl protease family p... 804 0.0
AT3G51350.1 | Symbols: | Eukaryotic aspartyl protease family p... 340 2e-92
AT3G51340.1 | Symbols: | Eukaryotic aspartyl protease family p... 285 7e-76
> AT3G51330.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:19053368-19056224 REVERSE LENGTH=1774
Length=1774
Score = 804 bits (435), Expect = 0.0
Identities = 613/699 (88%), Gaps = 11/699 (2%)
Strand=Plus/Plus
Query 397 GGTGTTCTTCTCCTGCAAGT-GTTTGCCCTTATCAGATCCCGTACCTTTTTAA-CACCAC 454
|||||||||||||||||||| | ||||||||||||||||| |||||||| ||| | |||
Sbjct 602 GGTGTTCTTCTCCTGCAAGTAG-TTGCCCTTATCAGATCCAGTACCTTTCTAAGGA-CAC 659
Query 455 ATCCACCAGAGGGACATTGTTTGAGGATGTATTGCATTTGGTCACAGAGGACGAGGGTTT 514
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTTTACCACCGGGACATTGTTTGAGGATGTATTGCATTTGGTCACAGAGGACGAGGGTTT 719
Query 515 AGAGCCTGTCAAAGCTAATATCACGCTTGGTTGTGGTCAGAATCAGACAGGTTTGTATCG 574
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| | ||
Sbjct 720 AGAGCCTGTTAAAGCTAATATCACGCTTGGTTGCGGTAAGAATCAGACAGGTTT-TCTCC 778
Query 575 -GAGAAGTTTGGCTGTGAACGGTCTTCTTGGGCTTGGTATGAAAGATTACTCAGTTCCGA 633
||| ||| |||||| || |||||||| ||||| ||| ||||||||||||| |||||||
Sbjct 779 AGAGTAGTGCGGCTGTTAATGGTCTTCTCGGGCTAGGTTTGAAAGATTACTCTGTTCCGA 838
Query 634 GTGTACTGGCAAAAGCAAATATCACTGCAAACTCTTTCTCAATGTGTTTCGGGAATATTA 693
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 839 GCATACTGGCAAAAGCAAAAATCACTGCAAACTCTTTCTCAATGTGTTTCGGGAATATCA 898
Query 694 TTGACTTTATCGGAAGAATCAGCTTCGGTGACAGAGGCTACACAGACCAGCTAGAGACAC 753
||||| || |||||||||||||||||||||||| ||| |||||||||||| | ||||| |
Sbjct 899 TTGACGTTGTCGGAAGAATCAGCTTCGGTGACAAAGGATACACAGACCAGATGGAGACGC 958
Query 754 CACTAGTTCCTATTGAACCAAATCCGACATATGCTGTGAATGTGACCGAAGTAACAGTGG 813
||||| |||||| ||||||| ||||||||||||||||| ||||||||||||| | || |
Sbjct 959 CACTACTTCCTACCGAACCAAGTCCGACATATGCTGTGAGTGTGACCGAAGTATCTGTAG 1018
Query 814 GGGGAGATATTCTCAAGATTCAGATGCTAGCTCTCTTCGACACTGGCACATCATTTACAC 873
|||||||| | | | ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1019 GGGGAGATGCTGTTGGGGTTCAGCTGCTAGCTCTCTTCGACACTGGAACATCATTTACAC 1078
Query 874 ACTTACTGGAGCCAGCATATGGTCTTCTTACCAAAGCTTTTGACGATCATGTAACTGATA 933
| ||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 1079 ATTTACTAGAACCAGAATATGGTCTTATTACCAAAGCTTTTGACGATCATGTCACTGACA 1138
Query 934 AGCGACGCCCGATCGATCCTGAGATTCCATTTGAGTTCTGTTACGACACAAGTCCAAATA 993
||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 1139 AGCGACGTCCGATTGATCCTGAGCTTCCATTTGAGTTCTGTTACGACTTAAGTCCAAACA 1198
Query 994 TTACAAGC-TTTAAATTCCCCAGAGTAAATATGACTTTTGTAGGAGGATCC-AAACTGAC 1051
|||| | ||| | |||||||||||| |||||||||| |||||||||| ||| ||
Sbjct 1199 AAACAACCATTTTA-TTCCCCAGAGTAGCGATGACTTTTGAAGGAGGATCCCAAA-TGTT 1256
Query 1052 TCTGAGAGATCCGCTTTTCACAGTGTGGAATGAGG-CAA 1089
||||||| |||||||||||| |||||||||||||| |||
Sbjct 1257 TCTGAGAAATCCGCTTTTCATAGTGTGGAATGAGGACAA 1295
Score = 396 bits (214), Expect = 3e-109
Identities = 280/312 (90%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 9 GAGAGTAAAGTCATGGCCTTTGCACGCCAAGTGTTTGTGTTATTGTCTGTGTTAGTGGCG 68
|||| | ||||||||| | ||||||||||||||||||||||||||||| ||||||| | |
Sbjct 61 GAGATTGAAGTCATGGTCGTTGCACGCCAAGTGTTTGTGTTATTGTCTCTGTTAGTTGTG 120
Query 69 TGTTGGGGACTGCAGAGATGTGAGAG-TGCTGGGAAGTTCAGCTTCGAAGTTCACCACAT 127
||||||||| || ||||||||||| | | |||||||||| ||||| ||||||||||| ||
Sbjct 121 TGTTGGGGATTGGAGAGATGTGAG-GCTTCTGGGAAGTTTAGCTTTGAAGTTCACCATAT 179
Query 128 GTTCTCTGATACGGTCAAGCAGAA-TCTTGGGTTTGGCGATCTAGTGCCCGAAAAGGGAA 186
||||||||||| ||||||||| || |||||| ||| |||||||||||| ||||||||||
Sbjct 180 GTTCTCTGATAGGGTCAAGCA-AAGTCTTGGACTTGACGATCTAGTGCCGGAAAAGGGAA 238
Query 187 GTTTGGAGTACTTCAAGCTTTTGGCCCAGCGCGATCGGTTGATCAGAGGTCGAGGTCTTG 246
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 239 GTTTGGAGTACTTCAAGGTTTTGGCACAGCGTGATCGGTTGATCAGAGGTCGAGGTCTTG 298
Query 247 CCTCCAACAACGAAGAAGCCCCTGTTACTTTCATCCTGGGAAATCGCACGGTTTCAATCG 306
||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||
Sbjct 299 CCTCCAACAACGAAGAAACCCCTATTACTTTCATGCGGGGAAATCGCACGATTTCAATCG 358
Query 307 ACTTTTTGGGAT 318
|| || ||||||
Sbjct 359 ACCTTCTGGGAT 370
> AT3G51350.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:19060322-19063510 REVERSE LENGTH=2012
Length=2012
Score = 340 bits (184), Expect = 2e-92
Identities = 281/326 (86%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 1 AAACCCTTGAGAGTAAAGTCATGGCCTTTGCACGCCAAGTGTTTGTGTTATTGTCTGTGT 60
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 243 AAACCTTTGAGAGTAAAGTCATGGACGTTGCACGCCAAGTGTTTGTGTTATTGTCTGTGT 302
Query 61 TAGTGGCGTGTTGGGGACT-GCAGAGATGTGAGAG-TGCTGGGAAGTTCAGCTTCGAAGT 118
|||||| |||||||||| | | ||||||||||| | | |||||||||| ||||||||||
Sbjct 303 TAGTGGTGTGTTGGGGATTTG-AGAGATGTGAG-GCTACTGGGAAGTTTGGCTTCGAAGT 360
Query 119 TCACCACATGTTCTCTGATACGGTCAAGCAGAA-TCTTGGGT-TTGGCGATCTAGTGCCC 176
|||||||| ||||||||| | |||||||| || |||||| | ||||||||||||| ||
Sbjct 361 CCACCACATTTTCTCTGATTCCGTCAAGCA-AAGTCTTGG-TCTTGGCGATCTAGTTCCG 418
Query 177 GAAAAGGGAAGTTTGGAGTACTTCAAGCTTTTGGCCCAGCGCGATCGGTTGATCAGAGGT 236
||| ||||||||||||||||||||||| ||||||| || |||||||| ||||| ||||||
Sbjct 419 GAACAGGGAAGTTTGGAGTACTTCAAGGTTTTGGCTCATCGCGATCGCTTGATTAGAGGT 478
Query 237 CGAGGTCTTGCCTCCAACAACGAAGAAGCCCCTGTT-ACTTTC-ATCCTGGGAAATCGCA 294
|||||||||||||| |||||||| ||| |||| | | |||||| || |||||| | ||
Sbjct 479 CGAGGTCTTGCCTCTAACAACGATGAAACCCC-GATCACTTTCGATGG-GGGAAACCTCA 536
Query 295 CGGTTTCAATCGA-CTTTTTGGGATC 319
|||||||| || | ||| | ||||||
Sbjct 537 CGGTTTCAGTCAAGCTTCT-GGGATC 561
> AT3G51340.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:19057013-19060036 REVERSE LENGTH=1841
Length=1841
Score = 285 bits (154), Expect = 7e-76
Identities = 272/327 (83%), Gaps = 15/327 (5%)
Strand=Plus/Plus
Query 1 AAACCCTTGAGAGTAAAGTCATGGCCTTTGCACGCCAAGTGTTTGTGTTATTGTCTGTGT 60
||| ||| |||| | |||| ||| | ||||||||||||||||||||||||||||| |||
Sbjct 229 AAAGCCTCGAGATTGAAGTTATGAACGTTGCACGCCAAGTGTTTGTGTTATTGTCTATGT 288
Query 61 TAGTGGCG-TGTT--GGGGACTGCAGAGATGTGAGAG-TGCTGGGAAGTTCAGCTTCGAA 116
|||| | | || |||| || ||||||||||| | | |||||||||| |||||||||
Sbjct 289 TAGTTTTGATCTTTTGGGGTTTGGAGAGATGTGAG-GCTTCTGGGAAGTTTAGCTTCGAA 347
Query 117 GTTCACCACATGTTCTCTGA--TACGGTCAAGCAGAA-TCTTGGGTTTGGCGATCTAGTG 173
|||||||||||||||||||| || | ||||||| || ||||||||||| ||||||||||
Sbjct 348 GTTCACCACATGTTCTCTGACGTA-G-TCAAGCA-AACTCTTGGGTTTGACGATCTAGTG 404
Query 174 CCCGAAAAGGGAAGTTTGGAGTACTTCAAGCTTTTGGCCCAGCGCGATCGGTTGATCAGA 233
|| ||||| ||||||||||||||||||||| |||||||||| || ||||| || ||||||
Sbjct 405 CCAGAAAACGGAAGTTTGGAGTACTTCAAGGTTTTGGCCCACCGTGATCGCTTCATCAGA 464
Query 234 GGTCGAGGTCTTGCCTCCAACAACGAAGAAGCCCCTGTTACTTTCATCCTGGGA--AATC 291
||||||||||||||||||||||| |||||| | ||| | |||| ||| ||| | || |
Sbjct 465 GGTCGAGGTCTTGCCTCCAACAATGAAGAAACTCCTCTCACTTCCAT--TGGAAGCAACC 522
Query 292 GCACGGTTTCAATCGACTTTTTGGGAT 318
|||| || || || | ||||||||||
Sbjct 523 TCACGCTTGCACTCAATTTTTTGGGAT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5