BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938002
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51390.1 | Symbols: | DHHC-type zinc finger family protein ... 1644 0.0
AT3G51400.1 | Symbols: | Arabidopsis protein of unknown functi... 220 2e-56
> AT3G51390.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:19075576-19078120 FORWARD LENGTH=1319
Length=1319
Score = 1644 bits (890), Expect = 0.0
Identities = 999/1052 (95%), Gaps = 5/1052 (0%)
Strand=Plus/Plus
Query 15 CAAACCATGGGCGTTTGTTGCCCTTTCCTTCAACCCTGGGATCGAGCTCGTGATCAATTT 74
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 137 CAAAACATGGGCGTTTGTTGCCCTTTCCTTCAACCCTGGGATCGAGCTCGTGATCAATGT 196
Query 75 CTCATCAACCTTCCTTGTCTCTCCGATCCTGTTCGAAGATCTTCTCTGCTTATGAAATTA 134
||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 197 CTCCTCAACCTCCCTTGTCTCTCCGATCCTGTTCGAAGATCTTCTCTACTTCTGAAATTG 256
Query 135 GCACTAGTGGTTCTCCACCTCGTCTTTATCGGCTTTCTCTTCCTTTTCGATGCAGATTTT 194
|||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 257 GCACTAGTAGCTCTCCACCTCGTCTTTATCGGCTTTCTCTTCCTTTTCGATGCTGAATTT 316
Query 195 ATTGAGAAGACTAAACGAGATCCATGGTACATGGGCTGTTATTTGTTGCTGTTTTCTGCC 254
|||||||| |||||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct 317 ATTGAGAAAACTAAACGAGATCCATGGTATATGGGCTGTTATATCTTACTGTTTTCTGCA 376
Query 255 ACTCTTCTGCAGTATTTTGTAACTTCTGGCTCTTCACCTGGGTATGTTGTTGATGCAATG 314
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ACGCTTCTGCAGTATTTTGTAACTTCTGGCTCTTCACCTGGGTATGTTGTTGATGCAATG 436
Query 315 AGGGATGTTTGCGAGACTAGTGCAATGTATAGAAACCCA-CTT-GCCTGCTCAATACAAC 372
||||||||||||||| ||||||||||||||||||||||| || | | |||||||||||
Sbjct 437 AGGGATGTTTGCGAGGCTAGTGCAATGTATAGAAACCCATCTACGAC--CTCAATACAAC 494
Query 373 ATGCTTCCAGAAAAAGTGAGAGCGTTGTTGTTAATATGGAAGGAGGATCAGCCTCATGTG 432
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 495 ATGCTTCCAGAAAAAGTGAGAGCGTTGTTGTTAATGTCGAAGGAGGATCAGCCTCATGTC 554
Query 433 CTAGAAGGACTCCAACGCCCTGGGGGAAGTTGGTTCTGGACTTGTACCCTCCAGGGACAT 492
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CCAGAAGGCCTCCAACGCCCTGGGGGAAGTTGGTTCTGGACTTGTACCCTCCAGGGACAT 614
Query 493 CTATAAGAAATTTGACATGCGGCTATTGTCATGTGGAGCAGCCTCCACGAACCAAACATT 552
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CCATTAGAAATTTGACATGCGGCTATTGTCATGTGGAGCAGCCTCCACGAACCAAACATT 674
Query 553 GTCATGATTGTGATCGATGTGTTCTTCAGTTTGATCACCACTGTGTTTGGCTAGGAACAT 612
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 675 GTCATGATTGTGATCGATGTGTTCTTCAGTTTGATCATCACTGTGTTTGGTTAGGAACAT 734
Query 613 GTATAGGCCaaaaaaaCCATTGTAAATTCTGGTGGTACATCTGTGAAGAGACAACTCTAT 672
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 735 GTATAGGCCAGAAAAACCATAGTAAATTCTGGTGGTACATCTGTGAAGAGACAACTCTAT 794
Query 673 GCATCTGGACGCTCATCATGTATGTTGACTACCTGAGTGACGTAGCAAAGCCTTGGTGGA 732
|||||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||
Sbjct 795 GCATCTGGACGCTCATCATGTACGTTGACTACCTGAGTAATGTAGCAAAACCTTGGTGGA 854
Query 733 AGAATGCAATTATCATACTGCTGCTTGTCATATTGGCGATCTCTTTGATTTTTGTGATGC 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 855 AGAATGCAATTATCATACTGCTGCTTGTCATATTGGCGATCTCTTTGATTTTTGTGCTGC 914
Query 793 TTCTATTGATTTTTCACAGCTATCTAATTCTGACAAATCAAAGCACTTACGAACTTGTGA 852
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 915 TTCTATTGATTTTTCACAGCTACCTAATTTTGACAAATCAAAGCACTTATGAACTTGTGA 974
Query 853 GACGAAGACGTATTCCATACATGAGGAATATTCCGGAACGAGTGCACCCTTTTAGCAGAG 912
|||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 975 GACGAAGACGTATTCCATACATGAGGAATATTCCGGGACGAGTGCATCCGTTTAGCAGAG 1034
Query 913 GAATTCGGAGGAACCTATACAACGTCTGTTGCGGAAATTATAATCTAGACTCACTCCCCA 972
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1035 GAATTCGGAGGAACCTATACAACGTCTGTTGCGGAAACTATAATCTAGACTCACTTCCCA 1094
Query 973 CTGCGTTTGAACTTGAGGATAGATCAAGACCCTACACTTGCATCGATATGTTGAAATGTC 1032
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1095 CAGCGTTTGAACTCGAGGATAGATCAAGACCCTACACCTGCATCGATATGTTGAAATGTC 1154
Query 1033 GCTGCTGCTAAGTTTT-CATTTATAGTTTTAT 1063
|||||||||||||||| |||||||||||||||
Sbjct 1155 GCTGCTGCTAAGTTTTTCATTTATAGTTTTAT 1186
> AT3G51400.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr3:19077850-19078955 REVERSE LENGTH=1106
Length=1106
Score = 220 bits (119), Expect = 2e-56
Identities = 132/138 (96%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 927 CTATACAACGTCTGTTGCGGAAATTATAATCTAGACTCACTCCCCACTGCGTTTGAACTT 986
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1106 CTATACAACGTCTGTTGCGGAAACTATAATCTAGACTCACTTCCCACAGCGTTTGAACTC 1047
Query 987 GAGGATAGATCAAGACCCTACACTTGCATCGATATGTTGAAATGTCGCTGCTGCTAAGTT 1046
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1046 GAGGATAGATCAAGACCCTACACCTGCATCGATATGTTGAAATGTCGCTGCTGCTAAGTT 987
Query 1047 TT-CATTTATAGTTTTAT 1063
|| |||||||||||||||
Sbjct 986 TTTCATTTATAGTTTTAT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5