BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938003
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51400.1 | Symbols: | Arabidopsis protein of unknown functi... 1269 0.0
> AT3G51400.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr3:19077850-19078955 REVERSE LENGTH=1106
Length=1106
Score = 1269 bits (687), Expect = 0.0
Identities = 791/843 (94%), Gaps = 0/843 (0%)
Strand=Plus/Plus
Query 12 TCATCATCAATGGCTGCTTCTTATCACATCCGATCTTGTAGCTTACCAGCTCGGTTACAC 71
||||||||||||||||| || || ||| |||||||| ||||||||||||||||| |||||
Sbjct 28 TCATCATCAATGGCTGCCTCATACCACGTCCGATCTAGTAGCTTACCAGCTCGGCTACAC 87
Query 72 CCACATGGTCTCAACCAGATTCAGCAAGTCCTGAATCAGCTTCCTGCAGATGATAACAAT 131
||||||||||||||||| ||||||||| |||| ||| |||||| ||||||||||||||||
Sbjct 88 CCACATGGTCTCAACCAAATTCAGCAACTCCTTAATAAGCTTCGTGCAGATGATAACAAT 147
Query 132 AGTCTATTGCTTCTCTCACATCTATACGACTCTGTCTCTCATCTCTTCAACGACTCACCT 191
||||| | ||||||||| |||| |||||||||||||||||||| |||||||| ||||||
Sbjct 148 AGTCTCTCACTTCTCTCAAATCTCTACGACTCTGTCTCTCATCTTTTCAACGATTCACCT 207
Query 192 TCTTCACTACTACTACCTCATCACTCTTTCTTCACCCACCTTCTTGATCTCTCTCTTGTA 251
|||||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 208 TCTTCACTTCTAGTCCCTCATCACTCTTTCTTCACTCACCTTCTTGATCTCTCCCTTTTA 267
Query 252 CACCTTGACTTGTGCTCCAAGCTTAGAGACATCACTTGCCGCATCAAGGACTGCCTCCGC 311
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 268 CACCTTGACTTGTGTTCCAAGCTAAGAGACATCACTTGCCGCATCAAGGATTGCCTCCGC 327
Query 312 GACCTCCGTTCTGCTTTCAGACGGAGGAGACACAGTGGAGATTCTACCATACGCTGTCAC 371
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 328 GACCTCCGTTCTGCTTTCAGACGGAGGAGACACAGTGGAGATTCTACCATTCGGTGTCAC 387
Query 372 GTCAAAGCCTTTATCCGCTCTAGGAAAGCGGTTCATAAGGACATTGCTAAGCTACTCTTG 431
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GTCAAAGCTTTTATCCGCTCTAGGAAAGCGGTTCATAAGGACATTGCTAAGCTACTCTTG 447
Query 432 TTGCTCAAACAAACCGGCCTTTCCTCCTCCGAGTCCACTCATCCCTTGATCACACTGCTC 491
|||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||||
Sbjct 448 TTGCTCAAACAAACCGGCCTATCCTCATCTGAGTCCTCTCATCCCTTGATCACACTGCTC 507
Query 492 CAACAAGTTTGTTCCCAAACATGTCATTCCTTTAGGACAGTCTTGTTGTCCCTATCCACA 551
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 508 CAACAAGTTTGTTCCCAAACATGTCAAACCTTTAGGACAGTCTTGTTGTCCCTATCCACA 567
Query 552 GCTGTTCCCAAGCCTAGGCCTTCCAAATGGGCCTTGGTCACCAAACTGGTGATCAAGAAC 611
||||| || ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 568 GCTGTACCTAAGCCCAGGCCTTCCAAATGGGCCCTGGTCACCAAACTGGTGATCAAGAAC 627
Query 612 GTTACTAGTACAAGTGGTCAAGTTCGGACTGGACACAGAAACGAATTCCATATGATGGAC 671
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 628 GTTACTAGTACAAGTGGTCAAGTTAGGACTGGACACAGAAACGAATTCCAGATGATGGAC 687
Query 672 GAAGAACTGCGAAGATTCAGCTTAGCAGAAGAGATAAAGAAGGATCGCATCAAGTCTATG 731
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 688 GAAGAACTGCGAAGATTCAGCATGGCAGAAGAGATAAAGAAGGATCGGATCAAGTCTATG 747
Query 732 ATCACCAACTTGGATCACGTAGATGTAGCTGTTGAAGATCTGGAGGAGTCGCTCGAAAGA 791
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 748 ATCACCAACTTGGATAAAGTAGATGTAGCGGTTGAAGATCTGGAGGAGTCGCTCGAAAGA 807
Query 792 TTGTACAGGCATATGATCCAAGCTAGAGTTTCTCTATTGAACATACTGTCTTTGCATATA 851
|||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 808 TTGTACAGACGTATGATCCAAGCTAGAGTTTCTTTATTGAACATACTCTCTTTGCATATA 867
Query 852 TAA 854
|||
Sbjct 868 TAA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5