BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938022
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1114 0.0
> AT3G51610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to oxidative stress;
LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast
hits to 53 proteins in 21 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other
Eukaryotes - 5 (source: NCBI BLink). | chr3:19139552-19142085
REVERSE LENGTH=955
Length=955
Score = 1114 bits (603), Expect = 0.0
Identities = 690/733 (94%), Gaps = 1/733 (0%)
Strand=Plus/Plus
Query 2 TCGCCGACAAAGCAAAGTTATGGCGGGCATGGCTGCGGTGGCAGGATCACGACCGTGGAA 61
||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 81 TCGCCAACGAAGCGGAGTTATGGCGGGCATGGCTGCGGTGGCAGGATTACGACCGTGGAA 140
Query 62 CGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCGCTATCTCCAGCGCTTA 121
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 141 CGCTTTTATTCAAGCTCTAGTTCTGATATCTCTATCATTTCCCTTTCTCTCCAGCGCTTA 200
Query 122 CCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAATATCACTCTTCGAGAACCAC 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 201 CCGACCTGGAGATATCGTCCGGATGAGCAAGATGGGGCAGTATCACTCTTCGAGAACGAC 260
Query 182 TTGGCATGATGTGATCGGAAAACATTGCCCGATCTTCGCCGTTAATCGCGAGGTGTTGAT 241
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 261 TTGGCATGATGTGATCGGAAAGCATTGCCCGATCTTCGCCGTCAATCGCGAGGTGTTGAT 320
Query 242 CCCCATAGCGAAACCAATTGGCTACACAGGAACTGATGCATATAAAATAAAATTCCAAGT 301
||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 321 CCCAATAGCGAAACCAATTGGCTACACAGGAACTGATCCTTATAAGATAAAATTCCAAGT 380
Query 302 TGGAAGTGAGAAATATCTAATTCATTGGCTTTTGGTAATAAACCGTAAGAGCTCAGAAGT 361
|||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 381 TGGAAGTGAGAAATTTCTGATTCACTGGCTTTTGGTAATTAATCGTAAGAGCTCAGAAGT 440
Query 362 TCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTGA 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 441 TCCGATGATCGATGTAAATTTGAGATATTCTGGAGGAGATCTGCTTGGAGTCACAGCTCA 500
Query 422 AGTTGTTGATATGCCTCATAGCTATCTAAATACACACCCGGAGATCCGTAAGCAGTTCTG 481
|||| | || ||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 501 AGTTATCGACATGCCTCATAGCTATCTGAATACACACCCGGAGATCCGCAAACAGTTTTG 560
Query 482 GGATCCTGAACAATGGCCAAAACATGTTCTAGTTAGATACACATGGAAGGAGCAGTCAGA 541
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 561 GGATCCTCAACACTGGCCAAAACATGTTCTTGTTAGATACACATGGAAGGAGCAGTCAGA 620
Query 542 GATTGATGTATCCTCGGGATTTTATGTCCTCTTTGGCTCAGCTCTCACATTTTCTTTCAT 601
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 621 GATTGATGTATCCTCAGGATTCTATGTCCTGTTTGGCTCAGCTCTCACATTTTCTTTTGT 680
Query 602 ACTCTCCATTTACGTCTTACAATCTTCACGAGAGAAGCTGGCGAGGTTTGTAAGAGAGAC 661
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 681 ACTCTCCATTTACGTCTTACAATCGTCACGAGAGAAGCTGGCAAGGTTTGTAAGAGAGAC 740
Query 662 GGTGGTGGAGAGCAGCAGCACGAATGTTGGAGAATTTGGCAAGGCGGATTGAGTCA-ATA 720
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 741 GGTGGTGGAGAGCAGCAGCATGAATGTTGGAGAATTTGGCAAGGGGGATTGAGTCACATA 800
Query 721 GACAAGTATATGT 733
| |||||||||||
Sbjct 801 GTCAAGTATATGT 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5