BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938032

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179266-1918118...   191    3e-48


> AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179266-19181189 
REVERSE LENGTH=1256
Length=1256

 Score =  191 bits (103),  Expect = 3e-48
 Identities = 147/167 (88%), Gaps = 7/167 (4%)
 Strand=Plus/Plus

Query  1    ATTCGCAGACCGCTACAATAATGGCCCTGGTTCG-CAAAAACT-CT-T-CTGCTTCTCTC  56
            |||| || ||||||||||||||||||||  || | || | ||| || | |||||||||||
Sbjct  25   ATTCACAAACCGCTACAATAATGGCCCTAATT-GACATACACTCCTCTCCTGCTTCTCTC  83

Query  57   GATGAGATCAAACCATGGAAGATCAA-AGTGCAGATTGTTAGAACGTGGAAGGGTGATAA  115
            |||||||||||||||||||||||||| | |||| || |||||||| ||||||||  || |
Sbjct  84   GATGAGATCAAACCATGGAAGATCAACA-TGCATATAGTTAGAACTTGGAAGGGAAATGA  142

Query  116  CAAAGAATCAGGCAACTCCGTCGACATGGTTTTACTCGATTCATCGG  162
            ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  143  CAAAGAATCAGGCAACTCCATCGACATGGTTTTACTCGATTCATCGG  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5