BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938039
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51760.1 | Symbols: | Protein of unknown function (DUF688) ... 1181 0.0
> AT3G51760.1 | Symbols: | Protein of unknown function (DUF688)
| chr3:19198146-19199498 REVERSE LENGTH=1268
Length=1268
Score = 1181 bits (639), Expect = 0.0
Identities = 749/802 (93%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 16 CTCAAATGATTTTGTATCTTACCGTTGAAGAAATGATGGATATTAACCGATCCCGAAGGT 75
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 89 CTCAGATGATTTTGTATCTTACGGTTGAAGAAATGATGGATATTAACCGATCCCGAAGAT 148
Query 76 TGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCAGCCAAGAGAAGCTTCCGG 135
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 149 TGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCACCCAAGAGAAGCTTCCGG 208
Query 136 GTCAGTTTCCGGAAGCTTCCGTCCCGTTTTGCTGGGAGACCGCTCCCGGGATGCCCAAGA 195
| ||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct 209 GCCAGTTTCCGGAAGCTTCTGTTCCATTTTGCTGGGAAACCGCTCCCGGGATGCCCAAGA 268
Query 196 ACTCGTCTCATTTGAAAAATGACGCTGAATCCGAGACGCCCCGCCTCAAACTACCTCCTG 255
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 269 ACTCGTCTCATTTGAAAAATGACGCTGAATCTGAAACGCCCCGGCTCAAACTACCTCCTG 328
Query 256 GAAGATTGAAGGTGCACGTTAATGGTGAAAACGACGACT-TTGATGACGCCAGTGAGAGT 314
||||| |||||||||| |||| |||| |||| || || | |||||||||| |||||||||
Sbjct 329 GAAGACTGAAGGTGCAAGTTACTGGTAAAAATGATGA-TCTTGATGACGCAAGTGAGAGT 387
Query 315 TTAACACCAGCTAGATTGTTGCATATGAAGAAACGCAACAATCACGAACATTTCCATCAA 374
||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 388 TTAACACCAGCTAAATTGTTGCATATGAAGAAACGCAACAATCAGGAATATTTCCATCAA 447
Query 375 ACCAACCAAGACACGGTCGATGTCTTGTCTCTCACGCAAGCCATAGACATGGTCGAACTC 434
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 448 ACCAACCAAGACGCGGTCGATGTCTTGTCTCTCACGCAAGCTATAGACATGGTCGAACTC 507
Query 435 CCAAAAGATAGCGTTTCGGAATC-G--GATG---GGAGCAGCGGAGCAGGTGACTCAAAC 488
||||||||||||||||| ||||| | |||| | ||||||| || |||||||||||||
Sbjct 508 CCAAAAGATAGCGTTTCAGAATCAGATGATGATAGAAGCAGCGTAGGAGGTGACTCAAAC 567
Query 489 GGCTACTTAACAATGGAAAGCACAGAACGAAGCGAAGACATGTCACCGAGTTACATAATA 548
|| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 568 GGGTACTTAACAATGGAGAGCACAGAGCGAAGCGAAGATATGTCACCGAGTTACATAATA 627
Query 549 GAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGA 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGG 687
Query 609 AGGAAGAAGAAGCTCTCTTATTTGAGTGGTGCAACCGTGAGGCAGTCTTGTTTTTCACCA 668
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 688 AGGAAGAAGAAGCTCTCTTATTTGAGTGGTGAAACGGTGAGACAGTCTTGTTTTTCACCA 747
Query 669 AAAGCTTGTGGCTTACATGTATTGCTGCCATGGAGCACTAAGCATAGAATCTGTGGCGTC 728
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 748 AAAGCTTGTGGATTACATGTATTGCTGCCTTGGAGCACTAAGCATAGAATCTGTGGCGTC 807
Query 729 AAAAATGCATTTTCTCCATCTTCCCACGTCCACTTGCAACCCAAGTTTATTACAAAAAAT 788
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 808 AAAAACGCCTTTTCTCCATCTTCACACGTCCACTTGCAACCCAAGTTTATTACAAAAGAT 867
Query 789 AACTAGTTGGATTAAGGTACTT 810
|||||| || ||| ||||||||
Sbjct 868 AACTAGATGAATTCAGGTACTT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5