BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938039 Length=814 Score E Sequences producing significant alignments: (Bits) Value AT3G51760.1 | Symbols: | Protein of unknown function (DUF688) ... 1181 0.0 > AT3G51760.1 | Symbols: | Protein of unknown function (DUF688) | chr3:19198146-19199498 REVERSE LENGTH=1268 Length=1268 Score = 1181 bits (639), Expect = 0.0 Identities = 749/802 (93%), Gaps = 8/802 (1%) Strand=Plus/Plus Query 16 CTCAAATGATTTTGTATCTTACCGTTGAAGAAATGATGGATATTAACCGATCCCGAAGGT 75 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 89 CTCAGATGATTTTGTATCTTACGGTTGAAGAAATGATGGATATTAACCGATCCCGAAGAT 148 Query 76 TGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCAGCCAAGAGAAGCTTCCGG 135 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 149 TGAACTTCAATGCTCCATTCTTGTCGACGAAGCGCCATGTCACCCAAGAGAAGCTTCCGG 208 Query 136 GTCAGTTTCCGGAAGCTTCCGTCCCGTTTTGCTGGGAGACCGCTCCCGGGATGCCCAAGA 195 | ||||||||||||||||| || || ||||||||||| |||||||||||||||||||||| Sbjct 209 GCCAGTTTCCGGAAGCTTCTGTTCCATTTTGCTGGGAAACCGCTCCCGGGATGCCCAAGA 268 Query 196 ACTCGTCTCATTTGAAAAATGACGCTGAATCCGAGACGCCCCGCCTCAAACTACCTCCTG 255 ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 269 ACTCGTCTCATTTGAAAAATGACGCTGAATCTGAAACGCCCCGGCTCAAACTACCTCCTG 328 Query 256 GAAGATTGAAGGTGCACGTTAATGGTGAAAACGACGACT-TTGATGACGCCAGTGAGAGT 314 ||||| |||||||||| |||| |||| |||| || || | |||||||||| ||||||||| Sbjct 329 GAAGACTGAAGGTGCAAGTTACTGGTAAAAATGATGA-TCTTGATGACGCAAGTGAGAGT 387 Query 315 TTAACACCAGCTAGATTGTTGCATATGAAGAAACGCAACAATCACGAACATTTCCATCAA 374 ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 388 TTAACACCAGCTAAATTGTTGCATATGAAGAAACGCAACAATCAGGAATATTTCCATCAA 447 Query 375 ACCAACCAAGACACGGTCGATGTCTTGTCTCTCACGCAAGCCATAGACATGGTCGAACTC 434 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 448 ACCAACCAAGACGCGGTCGATGTCTTGTCTCTCACGCAAGCTATAGACATGGTCGAACTC 507 Query 435 CCAAAAGATAGCGTTTCGGAATC-G--GATG---GGAGCAGCGGAGCAGGTGACTCAAAC 488 ||||||||||||||||| ||||| | |||| | ||||||| || ||||||||||||| Sbjct 508 CCAAAAGATAGCGTTTCAGAATCAGATGATGATAGAAGCAGCGTAGGAGGTGACTCAAAC 567 Query 489 GGCTACTTAACAATGGAAAGCACAGAACGAAGCGAAGACATGTCACCGAGTTACATAATA 548 || |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 568 GGGTACTTAACAATGGAGAGCACAGAGCGAAGCGAAGATATGTCACCGAGTTACATAATA 627 Query 549 GAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGA 608 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 GAGCGGTTTCTACCGGATGCAGCGGCTCTAGCAGCCGTGACATCAGCGGCTAGCCAAAGG 687 Query 609 AGGAAGAAGAAGCTCTCTTATTTGAGTGGTGCAACCGTGAGGCAGTCTTGTTTTTCACCA 668 ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct 688 AGGAAGAAGAAGCTCTCTTATTTGAGTGGTGAAACGGTGAGACAGTCTTGTTTTTCACCA 747 Query 669 AAAGCTTGTGGCTTACATGTATTGCTGCCATGGAGCACTAAGCATAGAATCTGTGGCGTC 728 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 748 AAAGCTTGTGGATTACATGTATTGCTGCCTTGGAGCACTAAGCATAGAATCTGTGGCGTC 807 Query 729 AAAAATGCATTTTCTCCATCTTCCCACGTCCACTTGCAACCCAAGTTTATTACAAAAAAT 788 ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 808 AAAAACGCCTTTTCTCCATCTTCACACGTCCACTTGCAACCCAAGTTTATTACAAAAGAT 867 Query 789 AACTAGTTGGATTAAGGTACTT 810 |||||| || ||| |||||||| Sbjct 868 AACTAGATGAATTCAGGTACTT 889 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39634741983 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5