BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938043
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51800.2 | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase M2... 1779 0.0
> AT3G51800.2 | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase
M24 family protein | chr3:19211027-19213709 REVERSE LENGTH=1581
Length=1581
Score = 1779 bits (963), Expect = 0.0
Identities = 1160/1249 (93%), Gaps = 38/1249 (3%)
Strand=Plus/Plus
Query 6 TCGAGAGTTATCAGAGATGAGTTCGGACGATGAGAGAGACGAGAAGGAGCTGAGTCTTAC 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCGAGAGTTATCAGAGATGAGTTCGGACGATGAGAGAGACGAGAAGGAGCTGAGTCTTAC 185
Query 66 CTCTCCTGAAGTCGTCACCAAGTACAAGAGCGCCGCTGAGATCGTTAACAAGGCGTTACA 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTCTCCTGAAGTCGTCACCAAGTACAAGAGCGCCGCTGAGATCGTTAACAAGGCGTTACA 245
Query 126 GGTTGTTTTAGCTGAATGCAAACCAAAAGCTAAGATTGTTGACATCTGCGAGAAAGGAGA 185
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 246 GGTTGTTTTAGCTGAATGCAAACCAAAAGCTAAGATTGTTGATATCTGTGAGAAAGGAGA 305
Query 186 -TGCTTTTATCAAAGAGCAAACAGCGAGCATGTACAAGAATGCTAAGAAGAAGATTGAGA 244
| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 306 CT-CTTTTATTAAAGAGCAAACAGCAAGCATGTACAAGAATTCTAAGAAGAAGATTGAGA 364
Query 245 GAGGTGTTGCTTTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTCTCACCGC 304
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 365 GAGGTGTTGCGTTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTTTCACCGC 424
Query 305 TTGCCAGTGATGAGTCTGTGTTGGAAGATGGTGATATGGTTAAAATTGATATGGGATGCC 364
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 425 TTGCTAGTGATGAGTCTGTGTTGGAAGATGGTGACATGGTTAAAATCGATATGGGATGTC 484
Query 365 ATATTGATGGGTTCATTGCTCTTGTTGGTCACACACATGTTCTTCAAGAAGGGCCTGTTA 424
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 485 ATATTGATGGGTTCATTGCCCTTGTTGGTCACACACATGTTCTTCAAGAAGGGCCTCTTA 544
Query 425 CTGGGCGTAAAGCTGATGTTATTCG-TGCCGCTAATACTGCAGCTGACGTTGCTTTGAGG 483
||||||||| ||||||||||| || |||||| |||||||||||||| |||||| | |||
Sbjct 545 GTGGGCGTAAGGCTGATGTTAT-CGCTGCCGCAAATACTGCAGCTGATGTTGCTCTAAGG 603
Query 484 CTCGTACGTCCTGGAAAGAAGAACACTGATGTAACTGAAGCCATTCAGAAGGTGGCTAG- 542
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 604 CTCGTACGTCCTGGAAAAAAGAACACTGATGTAACTGAAGCTATTCAGAAGGTAGCT-GC 662
Query 543 AGCTTATGACTGCAAAATTGTTGAAGGGGTTCTTTCCCACCAGATGAAGCAGCATGTGAT 602
||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 663 AGCTTATGACTGCAAAATTGTTGAAGGTGTTCTTTCCCACCAGCTGAAACAGCATGTGAT 722
Query 603 AGATGGAAACAAGGTTGTGCTAAGTGTATCGAGCCCTGAAACAACTGTTGACGAAGTGGA 662
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 723 AGATGGAAACAAGGTTGTGCTTAGTGTATCCAGCCCTGAAACAACTGTTGACGAAGTGGA 782
Query 663 ATTTGAAGAGAATGAAGTCTATGCAATAGATATTGTGGCAAGCACTGGTGATGGCAAGCC 722
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 783 ATTTGAAGAGAATGAAGTCTATGCAATAGATATTGTGGCAAGTACTGGTGATGGCAAGCC 842
Query 723 AAAGCTATTAGACGAGAAGCAAACAACTATTTACAAGAAAGATGAGAGTGTTAACTATCA 782
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 AAAGCTATTAGACGAGAAGCAAACAACTATTTACAAGAAAGATGAAAGTGTTAACTATCA 902
Query 783 GTTGAAGATGAAGGCCTCCAGATTCATAATCAGCGAAATTAAACAGAACTTCCCCCGTAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GTTGAAGATGAAGGCCTCCAGATTCATAATCAGCGAAATTAAACAGAACTTCCCCCGTAT 962
Query 843 GCCATTCACTGCAAGGTCACTGGAGGAGAAAAGGGCTCGTCTTGGTCTTGTGGAGTGTGT 902
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 963 GCCATTCACTGCAAGGTCACTGGAGGAGAAAAGGGCACGGCTTGGACTTGTGGAGTGTGT 1022
Query 903 GAACCATGGTCATTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGGG-AT-T--TT- 957
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1023 GAACCATGGTCATTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGCTCATGTCGTTT 1082
Query 958 -G-TTG-C--CCAG---ATTAAGTT-CACAG-TT---TT----G-----CTGATGCCAAA 995
| || | |||| ||| ||| | ||| || || | |||||||||||
Sbjct 1083 TGGTTTTCTACCAGGGGATTTTGTTGCTCAGATTAAGTTCACAGTTTTGCTGATGCCAAA 1142
Query 996 TGGATCGGATAGGATCACTTCACATACACTTCAGGAGCTTGGTACTAAGATTAGT-GAAG 1054
|||||| ||||||||||||||||||||||||||||| ||| || |||| | | ||||
Sbjct 1143 TGGATCAGATAGGATCACTTCACATACACTTCAGGAACTTCCTAAAAAGACCA-TCGAAG 1201
Query 1055 ACCCTGAGATCCAAGGGTGGTTAGCCTTGGGTATCaagaagaagaagggtggtggaaaga 1114
||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1202 ACCCTGAGATCAAAGGGTGGTTAGCTTTGGGCATCAAGAAGAAGAAAGGTGGTGGAAAGA 1261
Query 1115 agaagaaagcagccaagaaggcaggagagaaaggagaggCTTCAACAGAGGCTGAGCCAA 1174
|||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1262 AGAAGAAAGC--CCAA-AAGGCGGGAGAGAAAGGAGAGGCTTCAACAGAGGCTGAGCCAA 1318
Query 1175 TGGACGCAAGTAGTAATGCTCAAGAATGAGTAGGAAGATTTGTCTTTGT 1223
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGGACGCAAGTAGTAATGCTCAAGAATGAGTAGGAAGATTTGTCTTTGT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5