BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938044

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04430.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   143    1e-33


> AT1G04430.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr1:1198118-1201527 
FORWARD LENGTH=2379
Length=2379

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 200/253 (79%), Gaps = 34/253 (13%)
 Strand=Plus/Plus

Query  75    CTGATGCGTTTTCGGGTGTGCCAATGGAAGCTTGCATCACTCTTTACTCCAAGC---ACC  131
             |||||||| || |||||||  ||||||||||||||||||||| |||||||||||   |||
Sbjct  1426  CTGATGCGGTTGCGGGTGTTTCAATGGAAGCTTGCATCACTCCTTACTCCAAGCATGACC  1485

Query  132   -----A--AA-GG-AGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC  182
                  |  || || || |||||||||||||| |||||||||||||||||| |||||||||
Sbjct  1486  ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC  1544

Query  183   CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTT--G-A-GA-A--G-----T--ATA  228
             ||||||||||||||| |||||||||| |  || |||  | | || |  |     |  | |
Sbjct  1545  CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA  1604

Query  229   C-GCAAGTGGAC----A--GGAGTGTAATGTCATCAAAAGTCAAATCAAACACTGTGAGG  281
             |  |||||||||    |  ||| | | |||||||| ||||||||||||||||||||||||
Sbjct  1605  CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACACTGTGAGG  1664

Query  282   AACATAATAGACA  294
             |||||||| ||||
Sbjct  1665  AACATAATGGACA  1677



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5