BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938052

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22940.1 | Symbols: F8H | FRA8 homolog | chr5:7676938-767917...   455    1e-127


> AT5G22940.1 | Symbols: F8H | FRA8 homolog | chr5:7676938-7679179 
FORWARD LENGTH=1956
Length=1956

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 309/339 (91%), Gaps = 6/339 (2%)
 Strand=Plus/Plus

Query  10   GGTTTATTCAGCGGAATGAAGATATATGTTTACGATTTACCGGCGAGTTTTAACGACGAT  69
            ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct  569  GGTTTGTTCACCGGAATGAAGATATACGTTTACGATTTACCGGCGAGTTATAACGACGAT  628

Query  70   TGGGTTACGGCATCAGACCGGTGCGCTA-CTCATCTTTTTGCGGCGGAGGTAGCCATCCA  128
            |||||||| ||||||||||| ||||||| | || || || |||||||||||||| |||||
Sbjct  629  TGGGTTACAGCATCAGACCGTTGCGCTAGC-CACCTCTTCGCGGCGGAGGTAGCTATCCA  687

Query  129  CCGTACGCTTCTCTCCTCCGACGTCCGTACGTTAGACCCAGAAGAAGCTGATTTCTTCTT  188
            |||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  688  CCGTGCACTTCTCTCCTCCGACGTCCGTACGTTAGACCCAGATGAAGCTGATTACTTCTT  747

Query  189  CGTCCCTGTTTACGTTTCTTGCAATTTCTCCAAATCCAACGGCTTCCCTTCTCTAAGCCA  248
            ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  748  CGTCCCTGTCTACGTTTCTTGCAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCA  807

Query  249  TGCTCGCTCTCTC-TTCAGCTCCGCCGTCGATTTTCTCTCCGACCATTACCCGTTTTGGG  307
             |||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| 
Sbjct  808  CGCTCGCTCTCTCCTT-AGCTCCGCCGTCGATTTTCTCTCCGATCATTACCCATTTTGGA  866

Query  308  ATC-GGACTCAAGGCTCTGACCATGTTTTTGTCGCTTCC  345
            | | ||| ||||||||||||||| || || |||||||||
Sbjct  867  A-CAGGAGTCAAGGCTCTGACCACGTCTTCGTCGCTTCC  904



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17292105656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5