BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938054
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51870.1 | Symbols: | Mitochondrial substrate carrier famil... 1840 0.0
> AT3G51870.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:19243950-19246936 FORWARD LENGTH=1499
Length=1499
Score = 1840 bits (996), Expect = 0.0
Identities = 1134/1200 (95%), Gaps = 11/1200 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCCCTCTCTAAAACCATGGAAGAAGACAGAGCGATTCTCACTTTTCACCGT 60
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 6 TCTTCTTCTTCCCTCTCTACAA-CATGGAAGAAGACAGAGCGATTCTCACTTTTCACCGT 64
Query 61 ATCCCTTCTCTCAATTCCTCCTTACT---ATCCTCTTCTCCTGCCAAATCCGGCACCGTT 117
|||||||| ||||||||||||||| | | |||||||||| |||||||||||| |||
Sbjct 65 ATCCCTTCCCTCAATTCCTCCTTAATAACAACCTCTTCTCCGGCCAAATCCGGCGCCGAA 124
Query 118 CAATTTCGCCGCCGTGTCCTGCGAAATTCGGCTCGCGGAGAGTTCGGTTTAGGTAGATTC 177
|| |||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 125 CAGTTTCGCCGCCGTGTTCTGCGAAATCCAGCTCGCGGAGATTTCGGTTTAGGTAGATTC 184
Query 178 GCGTGCATTTCTCTGGTGGAGAAATGTGGTGAGCAGAGAGAATTCGCTCCGACGACGGCT 237
||||||||||| || |||||| || || | || ||||||||||||||||||||||| |||
Sbjct 185 GCGTGCATTTCACTCGTGGAG-AA-GT-GCGAACAGAGAGAATTCGCTCCGACGACAGCT 241
Query 238 CAGCTCTTGAACAATCCTCTTGCTATTCTTGCTCTTGTTCCAAAAGATGCCGCTATCTTC 297
|||||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||
Sbjct 242 CAGCTCTTGAACAATCCTCTAGCTATTCTTGCTCTTGTCCCTAAGGATGCAGCTATTTTT 301
Query 298 GCCGCCGGTGCTATTGCCGGAGCTGCCGCTAAAACTGTTACTGCTCCTCTTGACCGTATC 357
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 GCCGCCGGTGCTCTTGCCGGAGCCGCCGCTAAAACTGTTACTGCTCCTCTTGACCGTATC 361
Query 358 AAGCTTCTTATGCAGACACATGGTATACGACTTGGACATCAGAGTGCGAAGAAAGCGATA 417
|| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 362 AAACTTCTTATGCAGACACATGGTATAAGACTTGGACAACAGAGTGCGAAGAAGGCGATA 421
Query 418 GGATTTATCGAGGCAATCACTTTGATAGCTAAAGAAGAAGGAGTGAAAGGTTATTGGAAG 477
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 422 GGATTTATCGAGGCAATCACTTTGATAGCTAAAGAAGAAGGAGTTAAAGGTTATTGGAAA 481
Query 478 GGAAATTTACCTCAGGTTATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTAT 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GGAAATTTACCTCAGGTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTAT 541
Query 538 GAGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCGGAAGACTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GAGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCGGAAGACTT 601
Query 598 GCCGCGGGTGCTTGTGCTGGCATGACATCTACTTTGTTGACATACCCTCTAGATGTTTTG 657
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GCAGCTGGTGCTTGTGCTGGCATGACATCTACTTTGTTGACATACCCTCTAGATGTTTTG 661
Query 658 CGATTGAGGTTGGCTGTCGAACCTGGGTATCGAAAAATGTCTCAGGTTGCTTTGAGTATG 717
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 662 AGATTGAGGTTGGCTGTCGAACCTGGGTATCGAACAATGTCTCAGGTTGCTTTGAGTATG 721
Query 718 CTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATA 781
Query 778 GCTCCATACATTGCTGTAAACTTTTGTATCTTCGATCTGGTGAAGAAGTCTTTACCGGAG 837
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 782 GCTCCATATATTGCTGTAAACTTTTGTATTTTCGATCTGGTGAAGAAGTCTTTACCGGAG 841
Query 838 GAATATAGACAGAAGGCGCAATCGTCTCTACTCACAGCTGTTCTTTCAGCTGGTATTGCA 897
||||||||| ||||||| |||||||||||| | ||||||||||| |||||||||||||||
Sbjct 842 GAATATAGAAAGAAGGCACAATCGTCTCTATTAACAGCTGTTCTCTCAGCTGGTATTGCA 901
Query 898 ACACTGACATGTTACCCTCTAGACACTGTGAGACGACAAATGCAAATGAGAGGAACTCCA 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 902 ACACTGACATGTTACCCTCTAGACACTGTGAGACGGCAAATGCAAATGAGAGGAACTCCA 961
Query 958 TACAAATCAATTCCGGAGGCATTTGCTGGAATTATAGACCGTGATGGGCTTATAGGCTTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TACAAATCAATTCCGGAGGCATTTGCTGGAATTATAGACCGTGATGGGCTTATAGGCTTG 1021
Query 1018 TACCGCGGCTTTTTACCCAATGCATTGAAAACTCTACCAAACAGCAGTATTAGGCTTACA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TACCGCGGCTTTTTACCCAATGCATTGAAAACTCTACCAAACAGCAGTATTAGGCTTACA 1081
Query 1078 GCTTTCGACATGGTAAAACGCCTTATCGCCACAAGTGAGAAGCAGCTTCAAAAGATCAAC 1137
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1082 ACCTTCGACATGGTAAAGCGCCTTATCGCCACAAGTGAGAAGCAGCTTCAAAAGATCAGC 1141
Query 1138 GATGATAATCGGAATCGAGACCAAACTCAATAGC---CG-CATTTTTTAAATATAATTGT 1193
|||||||||||||||||||||||| ||||||| | | ||||||| |||||||||||
Sbjct 1142 GATGATAATCGGAATCGAGACCAAGCTCAATAACAAACCACATTTTTGGAATATAATTGT 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5