BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938059

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51920.1 | Symbols: CAM9, CML9, ATCML9 | calmodulin 9 | chr3...   797    0.0  


> AT3G51920.1 | Symbols: CAM9, CML9, ATCML9 | calmodulin 9 | chr3:19268043-19269479 
REVERSE LENGTH=756
Length=756

 Score =  797 bits (431),  Expect = 0.0
 Identities = 477/499 (96%), Gaps = 4/499 (1%)
 Strand=Plus/Plus

Query  1    ACTTTTCTTTGTGATCGAAG--ATGGCTGATGCTTTCACAGATGAACAGATCCAAGAGTT  58
            ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||
Sbjct  144  ACTTTTCTTTGTGATCGAAGATATGGCGGATGCTTTCACAGATGAACAGATCCAAGAGTT  203

Query  59   TTACGAAGCATTCTGTCTCATCGACAAAGATTCCGATGGGTTTATCACGAAGGAGAAGCT  118
            ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct  204  TTACGAAGCCTTCTGTCTCATAGACAAAGATTCCGATGGGTTCATCACGAAGGAGAAGCT  263

Query  119  AACGAAAGTGATGAAGTCGATGGGGAAGAATCCGAAGGCGGAACAACTCCAACAGATGAT  178
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  264  AACGAAAGTGATGAAGTCGATGGGGAAGAATCCAAAGGCGGAACAACTGCAACAGATGAT  323

Query  179  GAGTGATGTCGACATCTTCGGCAACGGTGGCATCACTTTTGATGATTTCTTGTATATTAT  238
            ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  324  GAGCGATGTTGACATCTTTGGCAACGGTGGCATCACTTTTGATGATTTCTTGTATATTAT  383

Query  239  GGCTCAAAACACTTCTCAGGAATCGGCATCGGATGAGTTAATAGAGGTATTCAGAGTGTT  298
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  384  GGCTCAAAACACTTCTCAGGAATCAGCATCGGATGAGTTAATTGAGGTATTCAGAGTGTT  443

Query  299  CGACAGAGACGGAGATGGTCTCATATCTCCACTTGAGTTGGGAGAAGGAATGAAAGACAT  358
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct  444  CGACAGAGACGGAGATGGTCTCATATCTCAACTTGAGTTGGGAGAAGGAATGAAGGACAT  503

Query  359  GGGGATGAAGATAACAGCGGAAGAAGCGGAGCATATGGTCCGAGAAGCCGACCTCGATGG  418
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  504  GGGGATGAAGATAACAGCAGAAGAAGCGGAGCATATGGTCCGAGAAGCCGACCTTGATGG  563

Query  419  CGATGGTCTTCTTTCATTCCACGAATTCTCTAAAATGATGATCGCTGCCTCTTATTAGCA  478
            ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct  564  CGATGGTTTTCTTTCTTTCCACGAATTCTCTAAAATGATGATTGCTGCCTCTTATTAGCA  623

Query  479  TT--GTGAAATGCCATGAT  495
            ||  |||||||||||||||
Sbjct  624  TTTTGTGAAATGCCATGAT  642



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23660283237


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5