BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938064

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54090.1 | Symbols: ATEXO70D2, EXO70D2 | exocyst subunit exo...   193    6e-49
  AT1G18740.1 | Symbols:  | Protein of unknown function (DUF793) ...  99.0    1e-20


> AT1G54090.1 | Symbols: ATEXO70D2, EXO70D2 | exocyst subunit exo70 
family protein D2 | chr1:20189567-20191900 FORWARD LENGTH=2334
Length=2334

 Score =  193 bits (104),  Expect = 6e-49
 Identities = 127/138 (92%), Gaps = 2/138 (1%)
 Strand=Plus/Plus

Query  1    TTTCCAGTTTCCGATTTTGAATATGGCAACACCAGAGAATCATGGCGATAG-TTCCGATT  59
            ||||||||||| |||| ||| |||||||||||| |||| || ||||| | | ||||||||
Sbjct  149  TTTCCAGTTTCAGATTCTGATTATGGCAACACCGGAGACTCGTGGCG-TTGATTCCGATT  207

Query  60   TAGAGACGGCGGAGAAGATAATACTCCGGTGGGATTCAACAACAACTGAAGAAGCTAAAG  119
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  208  TAGAGACAGCGGAGAAGATAATACTCCGGTGGGATTCAACAACATCTGAAGAAGCTAAAG  267

Query  120  AGAATCTGATTTTCCAAA  137
            ||||||||||||||||||
Sbjct  268  AGAATCTGATTTTCCAAA  285


> AT1G18740.1 | Symbols:  | Protein of unknown function (DUF793) 
| chr1:6463922-6465476 FORWARD LENGTH=1555
Length=1555

 Score = 99.0 bits (53),  Expect = 1e-20
 Identities = 57/59 (97%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  143  ATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAATGACAGCTCCGGCGAGCTAAGAA  201
            |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  621  ATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAAGAA  679



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8953640478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5