BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938068
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51990.1 | Symbols: | Protein kinase superfamily protein | ... 1845 0.0
> AT3G51990.1 | Symbols: | Protein kinase superfamily protein
| chr3:19287878-19289330 FORWARD LENGTH=1453
Length=1453
Score = 1845 bits (999), Expect = 0.0
Identities = 1088/1131 (96%), Gaps = 5/1131 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCTCTCGATTCAATGGGTTATCTCTCCTGCAAAGCTGGATCCGCCGTCGCAA 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CTTCTTCTTCCCTCGATTCAATGGGTTATCTCTCCTGCAAAGCTGGATCCGCCGTCGCAA 151
Query 61 TCGCCGTCTCATCTTCCGCATCGACCTCAGGATCCTCCTCCAGCAAAGCTTCTGCTCCTC 120
||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 152 TCGCCGTTTCATCTGCCGCATCAACCTCCGGATCCACCTCCAGCAAAGCTTCTGCTCCTC 211
Query 121 CCGAGTCTCCCATTGAAGACCGCCCTAGACTTCGCCGTTTCCTGCATCGCGATCTTGACT 180
|||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |
Sbjct 212 CCGAATCTCCCATTGAAGACCGTCCTAGACTTCGTCGTTTCCTCCATCGCGATCTCGAAT 271
Query 181 CAGCCACAGGAGGATTCGACATCAACAACCTCCTCGGACGTGGAAGCCATGGAAGCGTTT 240
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 272 CAGCCACAGGAGGTTTCGACATCAACAATCTCCTCGGACGTGGAAGCCATGGAAGCGTTT 331
Query 241 ACAAAGCGGTCATCGGTTCACGTCTCGTTGCCGTCAAGAGACCTTCGAAATCTCGTGAAA 300
||||||| |||||||||||||||| | | || ||||||||||||||||||||||| ||||
Sbjct 332 ACAAAGCTGTCATCGGTTCACGTCACATCGCGGTCAAGAGACCTTCGAAATCTCGAGAAA 391
Query 301 TCAGCCGTGAGTTCCACAACGAATTCGAGATTCTCTCCAGAATCCGTAGCCCTAGGTTCG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 392 TCAGCCGTGAGTTCCACAACGAATTCGAGATTCTCTCCAGAATCCGTAGCCCTAGGTTTG 451
Query 361 TGAATCTCTTAGGTTTTAGCGCCGATAACTCCAAAGAACCTCTTCTCGTTGTTGAATTCA 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 452 TGAATCTCTTAGGTTTTAGCGCCGATAACTCCAAAGAACCACTTCTCGTTGTTGAATTCA 511
Query 421 TGGGAAACGGAAGCTTATACGACGTGATTCACTCAGATTCCGTTTTAAATTCCGGTGCGA 480
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 512 TGGGAAACGGAAGCTTATACGACGTGATTCACTCAGATACCGTTTTAAACTCCGGTGCGA 571
Query 481 TTTCGAGCTGGAGCAAGCGAATCAAAATCGCTCTTCAGATTGCAAAAGCCGTACATCTTC 540
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTTCGAGCTGGAGTAAGAGAATCAAAATCGCTCTTCAGATTGCAAAAGCCGTACATCTTC 631
Query 541 TACATTCACAGGAGACACCGATCATACACAGAGATATCAAATCAGCAAACGTATTGATGG 600
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 632 TACATTCTCAAGAGACACCGATCATACACAGAGATATAAAATCAGCAAACGTATTGATGG 691
Query 601 ATAAGAATCTAAACGCGAAGCTAGGCGATTTCGGATTAGCGATCAGATGCAATGTAGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 692 ATAAGAATCTAAACGCGAAGCTAGGCGATTTCGGATTAGCGATCAGATGCAATGTTGATG 751
Query 661 ATCAAAAAGTGAAATCAACACCACCTGCAGGAACAATGGGGTACTTAGATCCAGATTACG 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 752 ATCAAAAAGTGAAATCAACACCACCTGCAGGAACAATGGGTTACTTAGATCCAGATTACG 811
Query 721 TAACGGCTGATAGATTAAGCACCAAAACAGATGTGTTCAGCTTCGGGATCTTGTTGTTAG 780
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 812 TAACGGCTGATAGATTAAGCACGAAAACTGATGTGTTTAGCTTCGGGATCTTGTTGTTAG 871
Query 781 AGATAATCAGCGGAAGAAAAGCAATCGACGTTAGATATTCGCCGTCGTTTATAGTAGATT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AGATAATCAGCGGAAGAAAAGCAATCGACGTTAGATATTCGCCGTCGTTTATAGTAGATT 931
Query 841 GGGCGATTCCGATGATAAAAAGAGGCAAAATCGGTGGAATTTATGATCCGAGAATCGGAC 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 932 GGGCGATTCCGATGATAAAAAGAGGCAAAATCGGTGGGATTTATGATCCGAGAATCGGAC 991
Query 901 CACCGATTGATGTAAGTGTGAGGAATCATTTGGGGTTAGTGGCGGCTAAGTGTGTGAGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CACCGATTGATGTAAGTGTGAGGAATCATTTGGGGTTAGTGGCGGCTAAGTGTGTGAGAA 1051
Query 961 CGTGTAGAGAGAAACGGCCGGGGATGGAGGAAGTGGTTGGGTGGCTCACGGGGTTGACTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CGTGTAGAGAGAAACGGCCGGGGATGGAGGAAGTGGTTGGGTGGCTCACGGGGTTGACTA 1111
Query 1021 AGTCTGTTAGGTCACGACGGTGGGATGATTTAAGCATTGGAAACCCGTGTATGATGGTCG 1080
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1112 AGTCGGTTAGGTCACGACGGTGGGATGAGTTAAGCATTGGAAACCCGTGTATGATGGTCG 1171
Query 1081 AGACGGTGGGT---CGACCCGTGGAATGAtttttt-ttC-TTTAAAATCAA 1126
||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1172 AGACGGTGGGTGGTCGACCCGTGGAATGATTTTTTATTTGTTTAAAATCAA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5