BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938069
Length=335
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05850.1 | Symbols: scpl38 | serine carboxypeptidase-like 38... 318 2e-86
AT3G52000.1 | Symbols: scpl36 | serine carboxypeptidase-like 36... 307 4e-83
> AT2G05850.1 | Symbols: scpl38 | serine carboxypeptidase-like
38 | chr2:2242681-2244487 REVERSE LENGTH=1584
Length=1584
Score = 318 bits (172), Expect = 2e-86
Identities = 275/323 (85%), Gaps = 13/323 (4%)
Strand=Plus/Plus
Query 16 GCCTCAATGATTCCTATCCTCCACGAGCTGATGAGTGAGGGTGTCCGAGTCTGGGTGTAC 75
||||||||| |||||||||| ||||| |||||| |||||||||||||||| | ||||||
Sbjct 1174 GCCTCAATGGTTCCTATCCTTCACGACCTGATGGGTGAGGGTGTCCGAGTATTGGTGTAT 1233
Query 76 AATGGAGATTTGGA-CCTGGC-AGTTCCATTTTCATCTACAATGGACGTGCTGAAGAAGA 133
| ||| || |||| | ||| | |||| ||| || ||||||||| ||||||||||| ||
Sbjct 1234 AGTGGGGACGTGGATGC-GGCTA-TTCCGTTTACAGCTACAATGGCCGTGCTGAAGACGA 1291
Query 134 TGAATCTAACGATTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACAGCTGGGAGGGT 193
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1292 TGAATCTAACGGTTGTAAACGAATGGCGTCCGTGGTTTACCGGAGGACAACTGGGAGGGT 1351
Query 194 TCACACAAGATTACCAAGGGAATTTTACGTATGCAACTGTGAAAGGAGCAGGTCATGATG 253
||||| | |||||| || |||| || ||||||||||||||||||||| |||||||| ||
Sbjct 1352 TCACAGAGGATTACGAACGGAACTTAACGTATGCAACTGTGAAAGGATCAGGTCATTCTG 1411
Query 254 TGCCTAAGGACCAACCTATACATGCTCTTAATCTCTTTAGTCTTTACCAGCTTTCTTC-G 312
| ||| |||||||||| |||||||||||||||| | | || ||||| |||| || |
Sbjct 1412 TTCCTTTGGACCAACCTGTACATGCTCTTAATCT----A-T-TT-ACCAG-TTTCATCCG 1463
Query 313 TAACACTCCTCTACCTCAAACAC 335
|||||||||||| ||||||||||
Sbjct 1464 TAACACTCCTCTCCCTCAAACAC 1486
> AT3G52000.1 | Symbols: scpl36 | serine carboxypeptidase-like
36 | chr3:19293010-19294702 FORWARD LENGTH=1510
Length=1510
Score = 307 bits (166), Expect = 4e-83
Identities = 273/322 (85%), Gaps = 17/322 (5%)
Strand=Plus/Plus
Query 18 CTCAATGATTCCTATCCTCCACGAGCTGATGAGTG-AGGGTGTCCGAGTC-TGGGTGTAC 75
|||| ||| |||||||| || ||||||||| | | |||||||||||||| | | |||||
Sbjct 1195 CTCATTGACACCTATCCTTCAGGAGCTGATG-GGGAAGGGTGTCCGAGTCAT-GCTGTAC 1252
Query 76 AATGGAGATTTGGACCTGGCAG-TTCCATTTTCATCTACAATGGACGTGCTGAAGAAGAT 134
|||||||| ||||||||| | |||||||| |||||||| ||| |||| |||||| |||
Sbjct 1253 AATGGAGACGTGGACCTGG-TGATTCCATTTACATCTACATTGGCCGTGGTGAAGACGAT 1311
Query 135 GAATCTAACGATTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACA-GCTGGGAGGGT 193
|||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1312 GAATCTGACGGTTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACATG-TGGGAGGGT 1370
Query 194 TCACACAAGATTACCAAGGGAATTTTACGTATGCAACTGTGAAAGGAGCAGGTCAT-GAT 252
||||| | |||||| ||||||| || || | || |||||||||||||||||||||| | |
Sbjct 1371 TCACAGAGGATTACAAAGGGAACTTAACCTTTGTAACTGTGAAAGGAGCAGGTCATAG-T 1429
Query 253 GTGCCTAAGGACCAACCTATACATGCTCTTAATCTCTTTAGTCTTTACCAGCTTTCTTCG 312
|| |||| ||||||||||||||||||||||||| |||||| | | |||||| | ||
Sbjct 1430 GTTCCTACGGACCAACCTATACATGCTCTTAATATCTTTA--C---A--AGCTTTATCCG 1482
Query 313 TAACACTCCTCTACCTCAAACA 334
||||||||| || |||||||||
Sbjct 1483 TAACACTCCACTCCCTCAAACA 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15633269939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5