BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938075
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52030.1 | Symbols: | F-box family protein with WD40/YVTN r... 1858 0.0
AT3G52040.1 | Symbols: | unknown protein; Has 37 Blast hits to... 111 1e-23
> AT3G52030.1 | Symbols: | F-box family protein with WD40/YVTN
repeat doamin | chr3:19301872-19304227 FORWARD LENGTH=1365
Length=1365
Score = 1858 bits (1006), Expect = 0.0
Identities = 1257/1373 (92%), Gaps = 37/1373 (3%)
Strand=Plus/Plus
Query 26 ATGGGGATAACAGAGACCGGCGACGAATCGTCGGCGAGGAAGATGCGACGTAGAA-TA-C 83
||||||| |||||||||||||||||||||||||||||| ||||||||||||| || || |
Sbjct 1 ATGGGGAGAACAGAGACCGGCGACGAATCGTCGGCGAGAAAGATGCGACGTA-AAGTACC 59
Query 84 CACCGTCGATCGAATCTCTAGACGCCGATATACTATGCCTCATCTTCTCTTTTCTTGATT 143
|| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 60 CA-CGTCGATCGAATCTCTAGACGCCGATATACTGTGCATCATCTTCTCTTTTCTTGATT 118
Query 144 TGTTTGACCTCGTTCACTGTACCGTCGTCTGCAATTCCTGGAATGCTGTCATCAACAA-G 202
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 119 TGTTCGACCTCGTTCATTGTACCGTCGTCTGCAATTCCTGGAATGCTGTTATCAA-AAGG 177
Query 203 CTGAAGTTGCTACAAGCTTCATGCCGGAAGATGCACCATCTCGGTTCCGATTTC-CCCAG 261
|||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 178 CTGAAGCTGCTACAAGCTTCTTGCCGGAAGATGCACCATCTCGGTTCCGA-CTCTCCCAG 236
Query 262 TAGTTCCACGTCACTTGATCGTCCAGCTGAGATAGATGTGGAGGATTTTGCGATGAAGCA 321
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TAGCTCCACGTCACTTGATCGTCCAGCTGAGATAGATGTGGAGGATTTTGCGATGAAGCA 296
Query 322 TCACAAGATGGCATTGTTAAGGGGTCGAATCGAAATTGAGCGATGGGAAGCTCATTCGAA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 297 TCACAAGATGGCATTGTTAAGGGGTCGAATCGAAATTGAGCGATGGGAAGCTCATTCTCA 356
Query 382 CCGGGTTTCTCAGTGTCGAATGAAGAAAGGTTTGCTTCTTACTGGTGTTGGTGATAAGAT 441
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 357 CCGGGTTTCTCAGTGTCGAATGAAGAAAGGTTTGCTTCTTACTGGTGTCGGTGATAAGGT 416
Query 442 TATGCGCCTCTGGTCATTAAAAAGCTACAAATGCATGGAAGAATACTCTCTTCCTGATGC 501
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 TATGCGCCTCTGGTCATTAAAAAGCTACAAATGCATGGAAGAATACTCCCTTCCTGATGC 476
Query 502 TGCTTCCTTGATTGACTTCGATTTTGATGAGA--AA-ACCTC--A-GTCG-AGTCACT-G 553
| |||||||||||||||||||||||||||||| || | | | || | | || || |
Sbjct 477 TTCTTCCTTGATTGACTTCGATTTTGATGAGAGTAAGAAATTGGAAGTTGTA-TCTCTAG 535
Query 554 -ATATG-G-ATTTCTGAAACCACCA--GTA-TAATTGTTG-GCTTG--G--TTGGT---- 598
|| | | |||| ||| | || | |||||| | ||| | |||||
Sbjct 536 CATGGGAGTATTT-TGATTCTGTTGTTGTTGTTGTTGTTGAGATTGTTGGCTTGGTTGGT 594
Query 599 ACCCGCATTAGCATATGGAGGAGAAATGGACAAAGAAGCATTTTTCCATCTCGTGAAGGC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 595 ACCCGCATTAGCATATGGAGGAGAAATGGACAAAGAAGCATTTTTCCATCTCGTGCAGGC 654
Query 659 ACCTTTCCTAAAGGCCTTTGTATGCGTTACATCGACCCAGAAGCTGTAGTTGGATGTGAG 718
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 655 ACCTTTCCTAAAGGCCTTTGTATGCGTTACATTGACCCAGAAGCTGTAGTTGGATGCGAG 714
Query 719 GATGGAACAGCTCGTGTATTTGATATGTACAGTAAGACATGTTCACAGATCATTAGGACT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GATGGAACAGCTCGTGTATTTGATATGTACAGTAAGACATGTTCACAGATCATTAGGACT 774
Query 779 CAGGGTGGGCCAATTACGTGCTTATCTTTGAGTGAGAACCAAGTATTTCTTAGTGGGTCC 838
|||||||||||||| || ||||||||| | || || || ||| ||||||||||||||||
Sbjct 775 CAGGGTGGGCCAATAACATGCTTATCTCTAAGCGATAATCAACTATTTCTTAGTGGGTCG 834
Query 839 TCACTAGGGAGAGTAACAGTATCTGACCCTTTGTTGGATCAACCAGTGGCTACACTTAAA 898
||||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 835 TCACTCGGGAGAGTAACAGTATCTGACCCTTTGATGGATCAACCAGTGGCCACTCTTAAA 894
Query 899 TCCACAATAACTGCTGGAGGTATACAGACCATCTGTTTTAACCAAGGCACTAATCTCGCG 958
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 895 TCCACGATAACTGCAGGAGGTATACAGACAATCTGTTTTAACCAAGGCACTAATCTCGCC 954
Query 959 TTCACTGGAACAACGGGTGGATATGTTTCATGCTGGGACCTTAGGAAAATGGGACGG-TT 1017
|||| ||||||||| |||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 955 TTCATTGGAACAACTGGTGGATATGTTTCATGCTGGGACCTCAGGAAAATGG-ATAGATT 1013
Query 1018 GTGGGAAAAACGAGTGAGTCCTAATGTCGTGTACTCAATACAACAGCTGAGGAATGACAC 1077
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1014 GTGGGAAAAACGAGTGAGTCCTAATGTCGTGTACTCAATACAACAGCTAAGGAATGACAC 1073
Query 1078 ATCGGTAATGGTAGCTGGTGGAATAGACGGTGTGCTGCG-AGTGATTGATCAGAATAGTG 1136
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1074 ATCGGTTATGGTAGCTGGTGGAATAGACGGTGTGCTGCGTA-TGATTGATCAGAAGAGTG 1132
Query 1137 GAAGAGTTTTATCTAGATTTATAATGGAGGATAAGGTCTCAACAACATTGAGAAGGGACA 1196
|||| |||||||||||| |||||||||| ||||| |||| ||||||| | |||| |||
Sbjct 1133 GAAGGGTTTTATCTAGAGTTATAATGGACGATAAATTCTCCACAACATCAACAAGGAACA 1192
Query 1197 ACCAAGTGGTGATAGAGAAAAGAAGAGGAAAAAGAGTTTCTCAAGATATGGAGATGGATA 1256
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1193 ACCAAGTGGTGATAGAGAAAAGAAGAGGAAAAAGAGTTTCTCAAGACATGGAGATTGATA 1252
Query 1257 AAATCGAAAGGAAAGTTCGGCCCCAAATCAGTTGCATAGCAATGGGGATGAAAAAGATAG 1316
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1253 AAATCGAAAGGAAAGTTCGGCCTCAAATCAGTTGCATAGCAATGGGGATGAAGAAGATGG 1312
Query 1317 TAACGGCTCACAATGGTAAATGCATAAGTGTATGGAGGTTCAATCTCTCGTAA 1369
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1313 TAACGGCTCACAATGGTAAATGCATAAGTGTATGGAAGTTCAATCTCTCGTAA 1365
> AT3G52040.1 | Symbols: | unknown protein; Has 37 Blast hits
to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:19304170-19304861 REVERSE
LENGTH=530
Length=530
Score = 111 bits (60), Expect = 1e-23
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 1312 GATAGTAACGGCTCACAATGGTAAATGCATAAGTGTATGGAGGTTCAATCTCTCGTAAAG 1371
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 530 GATGGTAACGGCTCACAATGGTAAATGCATAAGTGTATGGAAGTTCAATCTCTCGTAAAG 471
Query 1372 TCGCAAGAAACTTGT 1386
| ||| ||||||||
Sbjct 470 TAACAATAAACTTGT 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5