BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938076

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52040.1 | Symbols:  | unknown protein; Has 37 Blast hits to...   494    3e-139


> AT3G52040.1 | Symbols:  | unknown protein; Has 37 Blast hits 
to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:19304170-19304861 REVERSE 
LENGTH=530
Length=530

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 290/301 (96%), Gaps = 1/301 (0%)
 Strand=Plus/Plus

Query  2    CTAGAAACGACGAT-CAAAGATGACGCAGAAGAGCAACCAGTTCAAGGGCCAACAAAAGA  60
            |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct  40   CTAGAAACGACGATCCAAAGATGACGCAGAAGAGCAATCAGTTCAAGGGCCAACAGAAGA  99

Query  61   GGAAGACTATTGCTCCAAATCGCCATGGAAAATCCATTCAAACTCGCAAAGGGAAGAGAA  120
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  100  GGAAGACTATTGCTCCTAATCGCCATGGCAAATCCATTCAAACTCGCAAAGGGAAGAGAA  159

Query  121  ATGTGAAACCATCAAAGATGACGAAAGAGATGGACACTGATCGGGAGCTTACGAAATTCA  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  ATGTGAAACCAACAAAGATGACGAAAGAGATGGACACTGATCGGGAGCTTACGAAATTCA  219

Query  181  TAAACCATTGCAATGAAGTGAAAGCAACTAATGCAGCTTGCAAAGAAGGTGGTCAACTTA  240
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct  220  TAAACCATTGCAATGAAGTGAAAGCAACTAATGCAGCTTGTAAAGAAGGTGGTCAACTCA  279

Query  241  ATATCATCAAAGCTGAATCTCAAGCTGAGCCTTCCAAGAAATCTGCCAAATAGACAACAA  300
            ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct  280  ATATCATCAAAGCTGAATCTCAACCTGAGCCATCCAAGAAATCCGCCAAATAGACAACAA  339

Query  301  A  301
            |
Sbjct  340  A  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5