BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938080
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52072.1 | Symbols: | other RNA | chr3:19312684-19314577 RE... 562 8e-160
AT3G52070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 562 8e-160
> AT3G52072.1 | Symbols: | other RNA | chr3:19312684-19314577
REVERSE LENGTH=1154
Length=1154
Score = 562 bits (304), Expect = 8e-160
Identities = 355/378 (94%), Gaps = 9/378 (2%)
Strand=Plus/Minus
Query 6 TTCAATTCATCTTCTCATGGCGGCTCTCTCCACCACC-T-T-CTACCACCCACTCTGCAC 62
||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1101 TTCTATTCATCTTCTCATGGCGGCTCTCTCCACCACCTTCTACTACCACCCACTCTGCAC 1042
Query 63 TAACCACCGTACAAAGAGACAAGCCTCAAGCAGACACGGCGTTAGATCTATGAGAGTTAT 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1041 TAACCACCGTACAAAGAGACAAGCCTCAAGCAGACACGGAGTTAGATCTATGAGAGTGAT 982
Query 123 GTCTTGTCGGAAGCAGAAATTACCAGAAGAGAATGAAGGAGTGATCCAGAGAACAGTGAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 981 GTCTTGTCGGAAGCAGAAATTACCAGAAGAGAATGAAGGAGTGATCCAGAGAACATTGAG 922
Query 183 GAGGATGATTTCAGAGGCTGGGAA-ATTTGGGAAGAATCTGAAGCCAGAGAAGAAGAAAG 241
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 921 AAGGATGATTTCAGAGGCTGGGAAGATT-GGGAAGAATCTGAAGCCAGAGAAGAAGAAAG 863
Query 242 GAGACGTCAAGGATCTGATGCTTATGAGTCTTTCTTTTGCAGTTTATGTTTATATCTCTC 301
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 862 GAGACGTCAAGGACCTGATGCTTATGAGTCTCTCTTTTGCTGTTTATGTTTATATCTCTC 803
Query 302 AACTTTTGGTTTGTGCTTACTTCGCTTGGCAACATCTCAGCTTCCCCAA-TCCCTCATGG 360
|||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 802 AACTATTGGTTTGTGCTTACTTCTCCTGGCAACATCTCAGCTTCCCCAAATCT-TCATGG 744
Query 361 TAATAGC-AACGATAGCT 377
|| |||| || | |||||
Sbjct 743 TAGTAGCTAA-GCTAGCT 727
> AT3G52070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to
23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:19312718-19313224 FORWARD
LENGTH=507
Length=507
Score = 562 bits (304), Expect = 8e-160
Identities = 355/378 (94%), Gaps = 9/378 (2%)
Strand=Plus/Plus
Query 6 TTCAATTCATCTTCTCATGGCGGCTCTCTCCACCACC-T-T-CTACCACCCACTCTGCAC 62
||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 20 TTCTATTCATCTTCTCATGGCGGCTCTCTCCACCACCTTCTACTACCACCCACTCTGCAC 79
Query 63 TAACCACCGTACAAAGAGACAAGCCTCAAGCAGACACGGCGTTAGATCTATGAGAGTTAT 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 80 TAACCACCGTACAAAGAGACAAGCCTCAAGCAGACACGGAGTTAGATCTATGAGAGTGAT 139
Query 123 GTCTTGTCGGAAGCAGAAATTACCAGAAGAGAATGAAGGAGTGATCCAGAGAACAGTGAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 140 GTCTTGTCGGAAGCAGAAATTACCAGAAGAGAATGAAGGAGTGATCCAGAGAACATTGAG 199
Query 183 GAGGATGATTTCAGAGGCTGGGAA-ATTTGGGAAGAATCTGAAGCCAGAGAAGAAGAAAG 241
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 200 AAGGATGATTTCAGAGGCTGGGAAGATT-GGGAAGAATCTGAAGCCAGAGAAGAAGAAAG 258
Query 242 GAGACGTCAAGGATCTGATGCTTATGAGTCTTTCTTTTGCAGTTTATGTTTATATCTCTC 301
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 259 GAGACGTCAAGGACCTGATGCTTATGAGTCTCTCTTTTGCTGTTTATGTTTATATCTCTC 318
Query 302 AACTTTTGGTTTGTGCTTACTTCGCTTGGCAACATCTCAGCTTCCCCAA-TCCCTCATGG 360
|||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 319 AACTATTGGTTTGTGCTTACTTCTCCTGGCAACATCTCAGCTTCCCCAAATCT-TCATGG 377
Query 361 TAATAGC-AACGATAGCT 377
|| |||| || | |||||
Sbjct 378 TAGTAGCTAA-GCTAGCT 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18046121891
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5