BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938084

Length=263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52105.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   414    2e-115


> AT3G52105.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 35333 Blast hits to 
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; 
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; 
Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:19323332-19323827 
FORWARD LENGTH=496
Length=496

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 253/266 (95%), Gaps = 6/266 (2%)
 Strand=Plus/Plus

Query  1    aaaaaaaaaaa-aCAGAGA-GAAGAAAAAATGTTACAGCTGTTTTTCACGATAGCGTTCT  58
            ||||||||||| | ||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct  34   AAAAAAAAAAACAGAGAGAGGAAAAAAAAATGTTGCAGCTGTTTTTCACGATAGCGTTCT  93

Query  59   CGGCGGCGCCGTTAACGTTGTACATACCGCCGATTAGATGTTTGACGGTGTTTGTGGAGA  118
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  94   CGGCGGCGCCGTTAACGTTGTACATACCGCCGATAAGATGTTTGACGGTGTTTGTGGAGA  153

Query  119  CGATGGAGGAGATGGGAATGGAAGGTAGGGTTTATAGCCGGAGACTTTTTCCTCGAGCGA  178
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  154  CGATGGAGGAGATGGGAATGGAAGGTAGGGTTTATAGCTGGAGACTTTTTCCTCGAGCCA  213

Query  179  GAATTGCTTGGTCTAGGCTTCTCGATTGCTTCTTCTCCTCTTCACGTCCTCCTCTCTCTT  238
            ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | 
Sbjct  214  GAATTGCTTGGTCAAGGCTTCTCGATTGCTTCTTCTCCTCTTCACGTCCTC-TCTCT-T-  270

Query  239  CTTAAAA-TTATGTTCGTCTTTCTTC  263
            ||||||| ||||||||||||||||||
Sbjct  271  CTTAAAAATTATGTTCGTCTTTCTTC  296



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12013992011


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5