BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938088

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52130.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   603    5e-172


> AT3G52130.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:19331932-19332473 
REVERSE LENGTH=542
Length=542

 Score =  603 bits (326),  Expect = 5e-172
 Identities = 385/414 (93%), Gaps = 2/414 (0%)
 Strand=Plus/Plus

Query  3    ACCATCACTGTTTACACGATGATGAAAACTATGGGAGTTCGGCTGGCAATGGCGCTGCTC  62
            |||||| ||||||||| |||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct  1    ACCATCGCTGTTTACATGATGATGAAAGCTATGAGAGTTGGGTTGGCAATGACGCTGCTC  60

Query  63   ATGATCATAACTGTTCTTACCATTGTCATAGCGCAGCAAGCA-GACCTGCAACAACCACC  121
            |||| |||||| ||||||||||||||   ||||||||||| | | |||||||||||||||
Sbjct  61   ATGACCATAACCGTTCTTACCATTGTTGCAGCGCAGCAAG-AGGGCCTGCAACAACCACC  119

Query  122  TCCCCCACCGATGTTGCCCGAGGAGGAAGTGGGAGGATGCAGTAGAACATTCTTCTCCGC  181
            ||| ||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct  120  TCCACCACCAATGTTGCCCGAGGAGGAAGTGGGAGGATGCAGCAGGACATTTTTCTCCGC  179

Query  182  GCTGGTGCAGCTGATACCATGTAGAGCAGCAGTAGCTCCTTTCAGCCCGATCCCACCGAC  241
            |||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  180  GCTGGTACAGCTCATACCATGTAGAGCAGCAGTTGCTCCTTTTAGCCCGATCCCACCGAC  239

Query  242  CGAGATGTGTTGCTCTGCCGTTGTCACACTTGGTCGTCCTTGTCTTTGCCTCCTTGCCAA  301
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CGAGATATGTTGCTCTGCCGTTGTCACACTTGGTCGTCCTTGTCTTTGCCTCCTTGCCAA  299

Query  302  TGGACCTCCACTCTCCGGCATTGACCGCTCCATGGCCCTTCAGCTTCCTCAGAGATGCTC  361
            ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  300  TGGACCTCCACTCTCTGGCATTGACCGCTCCATGGCTCTTCAGCTCCCTCAGAGATGCTC  359

Query  362  TGCTAATTTCCCTCCCTGCGATGTCATCAACTAGGAAGGACATATCATCTTTCT  415
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  360  TGCTAATTTCCCTCCCTGCGATATCATCAACTAGGAAGGACATATCATCTTTCT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19654689859


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5