BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938099
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 673 0.0
> AT3G52230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast outer membrane, chloroplast thylakoid
membrane, chloroplast, chloroplast envelope; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth stages;
Has 29 Blast hits to 29 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19371213-19372687
FORWARD LENGTH=840
Length=840
Score = 673 bits (364), Expect = 0.0
Identities = 447/485 (92%), Gaps = 14/485 (3%)
Strand=Plus/Plus
Query 1 TCCGTCTCGGTGTATCAACAATGGCTGAAGAAGCTC-A--AGATCGTGCTAATGGCTCTG 57
|||||||||||| | || ||||||||||||||||| | ||||||| ||||||||||||
Sbjct 93 TCCGTCTCGGTGGAGGAAAAATGGCTGAAGAAGCTCAAGTAGATCGTTCTAATGGCTCTG 152
Query 58 A-T--TCATCTCCTCCCATAAAGTTACCTCCTTTCATCTCCAACCTATTCGCCTTTCTTC 114
| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 153 ATTCATCATCTCCTCCCATAAAGTTACCTCCTTTCATCACCAACCTATTCGCCTTTCTTC 212
Query 115 AACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCCACCGGCGAGAAGG 174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 213 AACCTAAGCCTCCTCCTGCTACTATTGATGCCAATGCTCCTAAACCTACCGGCGAGAAGG 272
Query 175 AACCTCAGAAGTCGACTTACGAGACTGTCTCTTTCCCTTACAATCCACCCAAAACCGCAG 234
|||||| ||| ||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 273 AACCTCTGAAATCGACCTACGAGACTGTCACTTTCCCTTACAATCCACCCAAAAGCGCAG 332
Query 235 AGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCTAACTCCGTCATCCTTT 294
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 333 AGCCAATCAAGTTTGAGGCTGAGCCCAGCTCTGGCAGGACTTCCAACTCTGTCATCCTTT 392
Query 295 GGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GGCAGGTATATGCACTTGGAGGGTTTCTTGTCCTGAAGTGGGCCTGGGCAAGATGGAATG 452
Query 355 AAAGGAACGAGAGAAGTGACAAAAATGAGGCGACGGGTGATGATGACCA-ACCTTCTAAT 413
||||||||||||||||||||||||| |||||||||||||||||||| || | | |
Sbjct 453 AAAGGAACGAGAGAAGTGACAAAAAGGAGGCGACGGGTGATGATGATCAGAAAG---A-T 508
Query 414 CAGAAAGATGATGATGATCAATCTTCTGATGGGCATGAAGACTAGTCATATTGCATGAAC 473
|| ||||| ||||||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 509 --GAT-GATGAGGATGATCAATCATCTGATGGGCATGAAGACTAGTCATATTACTTGAAC 565
Query 474 ACGAT 478
|||||
Sbjct 566 ACGAT 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22756068591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5