BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938107

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56590.2 | Symbols:  | hydroxyproline-rich glycoprotein fami...   200    5e-51


> AT3G56590.2 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr3:20964857-20968019 FORWARD LENGTH=1953
Length=1953

 Score =  200 bits (108),  Expect = 5e-51
 Identities = 145/163 (89%), Gaps = 1/163 (1%)
 Strand=Plus/Plus

Query  63   TTGGTTACCTCCATTCCTCGGATTTGCAGAACGAGGGGATCTTGATCTCGATCCAAGGTT  122
            |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct  431  TTGGTTACCTCCATTCCTCGGATTTGCAGATCCAGGGGATCTAGATCTCGATCCAAGGTT  490

Query  123  TAAAGATCACAGAATAATGGTGACTTTCGATGTTGAAAAACTAGTTTCATTCATGGAGGA  182
            |||||||||||||||| ||| || ||| ||||||| ||||| | |||| |||||||| ||
Sbjct  491  TAAAGATCACAGAATAGTGGCGAGTTTTGATGTTGGAAAACCAATTTCGTTCATGGAAGA  550

Query  183  AAATTTGCTGCAGCTTGAGAACGATATCACCGATTGAAGTAAG  225
             |||||| ||||||||||||| |||||||| ||| ||| ||||
Sbjct  551  CAATTTGATGCAGCTTGAGAATGATATCACTGAT-GAAATAAG  592



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10807566035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5