BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938116

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52360.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   464    2e-130


> AT3G52360.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to karrikin; LOCATED 
IN: endomembrane system; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G35850.1); 
Has 34 Blast hits to 34 proteins in 10 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19412120-19412918 
FORWARD LENGTH=707
Length=707

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 271/281 (96%), Gaps = 0/281 (0%)
 Strand=Plus/Plus

Query  22   ATGGAGAGTTCATTAGGTTTCATGGCGGTTTTCGCCGTCTCGGGAAGCGTTGTGTTCTTA  81
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  224  ATGGAGAGTTCATTAGGTTTCATGGCGGTTTTCGCCGTCTCAGGAAGCGTTGTGTTCTTA  283

Query  82   GCGAGTCAATTTCATAAGCGTCTTCTCTCCGATTACATGGAGAAATTCGATTTCGAAATC  141
            |||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||
Sbjct  284  GCGAGTCAATTTCACAAGCGTCTTCTCTCCGATTACATGGACAAGTTCGAATTCGAAATC  343

Query  142  CGAGCGCAGaaaaaaaTGGTGATGAAGAAAAAGGTGAGATTCGCGGCGGATGTGGTGGAG  201
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  344  CGAGCGCAGAAAAAAATGGTGATGAAGAAGAAGGTGAGATTCGCGGCGGATGTGGTGGAG  403

Query  202  CCGTCGGGGAATAACAAAGAGTATCGCCGGCGACACTCTTCCAAGGCTAAATCGAATTCC  261
            |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| 
Sbjct  404  CCGTCGGGGAATAACAAAGAGTATCGCCGGAGACATTCTTCCAAGGCTAAATCGAATTCG  463

Query  262  AAGATGGCGGCAACTATTTGATTTTAAGGTTTTTTGTACAA  302
            ||||||||||||||||||||| |||||||||||||||||||
Sbjct  464  AAGATGGCGGCAACTATTTGACTTTAAGGTTTTTTGTACAA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13974434222


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5