BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938119
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding p... 1476 0.0
> AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421397-19423097 FORWARD LENGTH=1454
Length=1454
Score = 1476 bits (799), Expect = 0.0
Identities = 961/1038 (93%), Gaps = 16/1038 (2%)
Strand=Plus/Plus
Query 4 CACAAACC-CGTTTTGTAAAATGTCGTCAGCATCTTGTTCCTCTGCCGTGGCGGTATCCG 62
|||||||| | ||| | |||||||||||||| | ||||||||| |||||||| |||||||
Sbjct 204 CACAAACCTC-TTTAGAAAAATGTCGTCAGCTTATTGTTCCTCCGCCGTGGCTGTATCCG 262
Query 63 CCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAGTCCATTACTCTTTTCCCACTCCAACT 122
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 263 CCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAATCCATTACTCTCCTCCCACTCCAA-T 321
Query 123 T-CCGGCTCTTCTATCGCTTCACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAAT 181
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 322 TCCCAACTCTTCTATCGCTTTACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAAT 381
Query 182 CCACTTATCCTCCATTCAAATATCCGTCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAA 241
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 382 CCACTAATCCTCCACTCAAATATCCGCCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAA 441
Query 242 GCTACTTCTGCCGATGAAGAAATCCAGGCATCACTagaagaagaagaagaagtagaagaa 301
|||| ||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 442 GCTAGTTCCGCCGATGATGAAATCCAGGCATCAGTAGAAGAAGAAGAAGAGGTAGAAGAA 501
Query 302 gaagaagaagaagaagtagaggaagaag-aCGCA-GATGAAAAACAGACTACACAAGCGA 359
|||| ||| |||| || || ||||||| | | | || ||||||||||| || |||||||
Sbjct 502 GAAGGAGATGAAG--GT-GAAGAAGAAGTA-G-AGGAAGAAAAACAGACGACGCAAGCGA 556
Query 360 GTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGC 616
Query 420 TCTCTCAGCTTTTTGGAGAAGCTGGCAA-TGTCGTCGATGTTCAGATTGTTTATGATAAA 478
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 617 TCTCTCAGATTTTTGGAGAAGCTGG-AACTGTCGTCGATGTTCAGATTGTTTATGATAAA 675
Query 479 GTCACTGATAGAAGCAGAGGATTTGGATTTGTAACCATGGGAACCATCGAAGAAGCTAAG 538
|| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 676 GTTACTGATAGAAGCAGAGGATTTGGATTTGTAACAATGGGAAGCATTGAAGAAGCTAAA 735
Query 539 GAAGCGATTCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACTGTGAAAGTGAACTTC 598
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 736 GAAGCGATGCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACGGTGAAAGTGAACTTC 795
Query 599 CCGGAGGTGCCGAGAGGCGGAGAGAGA-GAAGTAATGAGAACCAAAATCCGTGATACTAA 657
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||
Sbjct 796 CCGGAGGTGCCGAGAGGCGGTGAGA-ACGAAGTAATGAGAACCAAAATCCGTGATAATAA 854
Query 658 CCGAAGTTATGTCGATAGTCCTCATAAGATTTATGCAGGAAACCTTGGTTGGAATCTAAC 717
||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 855 CCGGAGTTATGTTGATAGTCCTCATAAGGTATATGCAGGAAACCTTGGTTGGAATCTAAC 914
Query 718 TTCCCAAGGTTTAAAAGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTAT 777
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTCACAAGGTTTAAAGGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTAT 974
Query 778 CTATGAAAGAAACACTGGGAGGTCTCGGGGATTTGGTTTCATCTCGTTCGAGTCAGCGGA 837
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 975 CTATGAAAGAAATACTGGGAGGTCTAGGGGGTTTGGTTTCATCTCGTTCGAGTCAGCGGA 1034
Query 838 AGATGTTCAGTCTGCTTTGGCTACCATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAG 897
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1035 AAATGTTCAGTCTGCTTTGGCTACAATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAG 1094
Query 898 GCTAAATTTGGCTTCAGAGAGAGAGAAAGCCACCGTATCTCCTCCATCTGTAGAAGAAGG 957
|||||||||||||||||||||||||||| |||| || |||||||| || |||||||||||
Sbjct 1095 GCTAAATTTGGCTTCAGAGAGAGAGAAACCCACTGTGTCTCCTCCTTCCGTAGAAGAAGG 1154
Query 958 AGAAACCAAAGAGGCCAGTCTAGAGAGTAGTGAGGTGCTTTCGAACGTTAGTACATGAAG 1017
||||||| | ||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 1155 AGAAACCGAGGAGGCCAGTCTAGAGAGTAACGAGGTGCTTTCGAATGTTAGTGCATGAAG 1214
Query 1018 AAAGCAATAGCACAATAG 1035
| |||| ||||||||||
Sbjct 1215 CA-GCAAAAGCACAATAG 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5