BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938122
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52430.1 | Symbols: PAD4, ATPAD4 | alpha/beta-Hydrolases sup... 2361 0.0
> AT3G52430.1 | Symbols: PAD4, ATPAD4 | alpha/beta-Hydrolases superfamily
protein | chr3:19431371-19434403 FORWARD LENGTH=1932
Length=1932
Score = 2361 bits (1278), Expect = 0.0
Identities = 1549/1679 (92%), Gaps = 22/1679 (1%)
Strand=Plus/Plus
Query 2 CTCTACTCGATCTCCAATCATGGAAGATTGTCGATTCGAGACGAGTGAGTTACAAGCGTC 61
||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 177 CTCTACTCGATATCCAATCATGGACGATTGTCGATTCGAGACGAGTGAGTTGCAAGCTTC 236
Query 62 GTTGATGATGTCGACACCGTTATTTACCGATTCTTGGAGTTCATGCAACGCCGCGAATTG 121
| | ||||| ||||| || |||||||||||||||||||||||||||||| |||| |||||
Sbjct 237 GGTAATGATATCGACTCCTTTATTTACCGATTCTTGGAGTTCATGCAACACCGCAAATTG 296
Query 122 CGACGGGAGTATAAAGATCCA-GCACATCGCCGGAATTACGTACGTTGCTATACCGGCGG 180
| ||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||
Sbjct 297 CAACGGGAGTATAAAGATCCATG-ACATCGCCGGGATTACATACGTTGCTATACCGGCGG 355
Query 181 TGCCGATGATTCAGTTGGGGGATCTTGTGGGCTTGCCAGTCGCCGGAGATGTTCTTTTCC 240
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 356 TATCGATGATTCAGTTGGGGAATCTTGTGGGCTTGCCAGTCACCGGAGATGTTCTTTTCC 415
Query 241 CCGGCTTATCCTCCGATGAGCCTCTGCCTATGGTCGACGCTGCCATACTTAATCTCTTTT 300
||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 416 CCGGCTTATCCTCCGATGAACCTCTACCTATGGTCGACGCTGCCATACTCAAACTCTTTC 475
Query 301 TTCAATTAAAGATCAAGGAAGTATTGGAATTGGAATTGGTAGGAAAAAAGCTGGTGGTGA 360
|||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 476 TTCAGTTAAAGATCAAGGAAGGATTGGAATTGGAATTGTTAGGTAAAAAGCTGGTGGTGA 535
Query 361 TAACCGGTCATTCAACCGGTGGTGCAGTGGCCGCTCTCACCGCACTTTGGCTTCTATCTC 420
||||||| ||||||||||| || ||| |||||||| ||||||||||||||||||||||||
Sbjct 536 TAACCGGCCATTCAACCGGCGGCGCATTGGCCGCTTTCACCGCACTTTGGCTTCTATCTC 595
Query 421 AAACTTCTCTGCCGCCATTCCGCGTCTTTTGCATCACCTTTGGCTCTCCTCTGCTCGGAA 480
|| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 AATCTTCTCCGCCGTCATTCCGCGTCTTTTGTATCACCTTTGGCTCTCCTCTGCTCGGAA 655
Query 481 ACCAATCTCTCTCTACCTCAATTTCACGATCACGTTTAGCACATAACTTCTGCCACGTGG 540
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 656 ACCAATCTCTCTCCACCTCAATTTCACGATCACGTTTAGCACACAACTTCTGCCACGTGG 715
Query 541 TTTCCATCCACGACCTCGTTCCTAGAAGCAGCAATGAACAATTCTGGCCCTTTGGAACTT 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCTCCATCCACGACCTCGTTCCTAGAAGCAGCAATGAACAATTCTGGCCCTTTGGAACTT 775
Query 601 ATC-TCTTCTGTTCCGACAATGGAGGTGTCTGTCTAGACAACGCTGATTCTGTTCGTCGG 659
| | | |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 776 A-CTTGTTCTGTTCCGACAAAGGAGGTGTCTGTCTAGACAACGCTGGTTCTGTTCGTCTG 834
Query 660 ATGTTTGATATCCTCAACGCCACGGGAACTCCAAACATCGAGGAACATCAGAGGTACGGA 719
|||||| ||||||||||| |||| | ||||| ||||| ||||||||||||||||||||||
Sbjct 835 ATGTTTAATATCCTCAACACCACAGCAACTCAAAACACCGAGGAACATCAGAGGTACGGA 894
Query 720 CACTATGTGTTCACACTTTCTCACATGTTTCTTAAATCTAGAAGCTTTCTTGGTGGGAAT 779
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 895 CACTATGTGTTCACACTTTCACACATGTTTCTTAAATCTAGAAGCTTTCTTGGTGGGAGT 954
Query 780 ATCCCCGACAATAGCTACCAAGCTGGTGTTGCGTTAGCCGTTGAAGCTCTAGGTTTCTCT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATCCCCGACAATAGCTACCAAGCTGGTGTTGCGTTAGCCGTTGAAGCTCTAGGTTTCTCT 1014
Query 840 AATGATGACACAAGTGGTGTATTAGTC-AAGAAATGTATAGAAAAAGCTACAAGAATTGT 898
|| |||||||||||||| || |||||| ||| |||||||||||| |||||||||||||||
Sbjct 1015 AACGATGACACAAGTGGCGTTTTAGTCAAAG-AATGTATAGAAACAGCTACAAGAATTGT 1073
Query 899 TCGGGCTCCGATTCTGAGGTCAGCCGCA-TTAGCCAATGATCTTGCTAGTGTCTTGCCAG 957
||||||||| |||||||||||||| | | ||||||||||| |||||||||||||||||||
Sbjct 1074 TCGGGCTCCTATTCTGAGGTCAGCTG-AGTTAGCCAATGAGCTTGCTAGTGTCTTGCCAG 1132
Query 958 CAAGACTTGAGATTCAATGGTACAAAGATCGTTGCGACGCATCAGAAGAGGAGCTCGGTT 1017
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 1133 CAAGACTCGAGATTCAATGGTACAAAGATCGTTGCGATGCATCAGAAGAGCAGCTAGGTT 1192
Query 1018 ACTACGATTTCTTCAAACGATATTCGTTGAA-ACGAGACTTTAAGGTGAACATGAGTCGC 1076
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1193 ACTACGATTTCTTCAAACGATATTCGTTGAAGA-GAGACTTTAAAGTGAACATGAGTCGC 1251
Query 1077 ATAAGACTAGCTCAGTTTTGGGACAAAGTGGTTGAAATGGTGGAGACGAATGAGTTGCCT 1136
|||||||||||| |||||||||||| |||| || |||||||||||||||||||||| |||
Sbjct 1252 ATAAGACTAGCTAAGTTTTGGGACACAGTGATTAAAATGGTGGAGACGAATGAGTTACCT 1311
Query 1137 TTTGATTTTCATCTAGGAAAGAAATGGGTTTACACGGCTCAATTTTATCAACTCTTAGCC 1196
|||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1312 TTTGATTTTCATTTAGGAAAGAAATGGATTTACGCATCTCAATTTTATCAACTCTTAGCC 1371
Query 1197 GAGCCACTCGACATTGCGAATTTCTACAAAAACAGAGATATAAAGAGTGGTGGACATTAC 1256
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 1372 GAGCCACTCGACATTGCGAATTTCTACAAAAACAGAGATATAAAGACTGGCGGGCATTAC 1431
Query 1257 TTGGATCAGGGGAATAGACCTAAAAGGTATGAGGTGATTGATCAATGGCAGAAAGGATTT 1316
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1432 TTGGA---GGGGAATAGACCTAAAAGGTATGAGGTGATTGATAAATGGCAGAAAGGAGTT 1488
Query 1317 GGAA-TGCCCGAGAAGTGTGTGAGAAGCAGATACACGAGCACTACGCAAGATACTTGCTT 1375
|| |||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1489 A-AAGTGCCTGAGGAGTGTGTGAGAAGCAGATACGCGAGCACAACGCAAGATACTTGCTT 1547
Query 1376 TTGGGCTAAGCTTGAGGAAGTAAAAGAGTGTTTGGATGAGGTGATAAAAGAGAGTAGTGA 1435
|||||||||||||||| ||| ||||||||| |||||||||| || |||||||||||||||
Sbjct 1548 TTGGGCTAAGCTTGAGCAAGCAAAAGAGTGGTTGGATGAGGCGAGAAAAGAGAGTAGTGA 1607
Query 1436 TGCGCAGAGGCGATCTTTGTTATGGGAAAAGATTATTCGGTTTGAGAGATATGCGAATAC 1495
| | |||||| ||||||||||| ||||||||||| ||| || ||||| |||||||||||
Sbjct 1608 TCCCCAGAGGAGATCTTTGTTACGGGAAAAGATTGTTCCATTCGAGAGTTATGCGAATAC 1667
Query 1496 ATTGGTGAAGAAGAAGGAGGTTTCTAAGGATGTTAAGGCGAAGAATTCGAGTTATAGTGT 1555
|||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 1668 ATTGGTGACGAAGAAGGAGGTTTCTTTGGATGTTAAAGCGAAGAACTCGAGTTATAGTGT 1727
Query 1556 GTGGGTGG-GAAATCTGAGAGAGTTCAAG-GTCAAAATGGGTTATGTAAATGAAATTGAG 1613
||||| || ||| ||||| |||||||||| | |||||||||||||| |||||||||||||
Sbjct 1728 GTGGGAGGCGAA-TCTGAAAGAGTTCAAGTG-CAAAATGGGTTATGAAAATGAAATTGAG 1785
Query 1614 ATGGTTG---ATGAGAGTGACGCAATGGAGACTTCGTAGGATTAATAGCAAATCTAATG 1669
||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct 1786 ATGGTTGTTGATGAGAGTGACGCAATGGAGACTTAGTAGGACTAATAGCAAATCGAATG 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82479495435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5