BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938123

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52440.1 | Symbols:  | Dof-type zinc finger DNA-binding fami...  1110    0.0  
  AT5G65590.1 | Symbols:  | Dof-type zinc finger DNA-binding fami...  69.4    5e-11


> AT3G52440.1 | Symbols:  | Dof-type zinc finger DNA-binding family 
protein | chr3:19435447-19436190 FORWARD LENGTH=744
Length=744

 Score = 1110 bits (601),  Expect = 0.0
 Identities = 704/753 (93%), Gaps = 9/753 (1%)
 Strand=Plus/Plus

Query  24   atggagagagcagagGCCTTGACGTCATCGTTTATATGGCGGCCAAACGCAAACGCAAAC  83
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAGAGCAGAGGCCTTGACATCATCGTTTATATGGCGGCCAAACGCAAACGCAAAC  60

Query  84   ACGGAGATAACGCCGAGTTGTCCAAGATGTGGATCCTCCAACACAAAGTTCTGTTACTAC  143
             ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   GCGGAGATCACGCCGAGTTGTCCAAGATGTGGATCCTCTAACACAAAGTTCTGTTACTAC  120

Query  144  AACAACTATAGCCTAACTCAGCCTCGCTACTTTTGCAAAGGCTGCCGCAGATATTGGACC  203
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  AACAACTATAGCCTCACTCAGCCTCGCTACTTCTGCAAAGGCTGCCGCAGATATTGGACC  180

Query  204  AAAGGTGGCTCCCTCCGCAATGTTCCTGTAGGTGGTGGCTGTCGCAAATCCCGCCGCCCC  263
            |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  181  AAAGGTGGTTCCCTCCGCAATGTTCCTGTAGGCGGTGGCTGTCGAAAATCCCGCCGCCCC  240

Query  264  AAATCCTCCTCTGGTAACAACGCTAAAACCGGCCTAACCGCTAATTCTGGCAGCTCTGGT  323
            ||||| || |||||||||||  |||||||  ||||||||||||||||||||| | | |||
Sbjct  241  AAATCATCTTCTGGTAACAATACTAAAACTAGCCTAACCGCTAATTCTGGCAACCCCGGT  300

Query  324  GGTGGTTCACCAAGTATAGATCTTGCTCTTGTTTACGCCAATTTCTTGAATCCAAAGACT  383
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  301  GGTGGTTCACCAAGCATCGATCTTGCTCTTGTTTACGCCAATTTCTTGAATCCAAAGCCT  360

Query  384  GATGAATCTATACTACAAGAAAACTGCGATTTAGCTACAGTCACTACGGATTTTCTAGTT  443
            || |||||||||||||||||||| ||||| ||||   |   ||||||||||||| | || 
Sbjct  361  GACGAATCTATACTACAAGAAAATTGCGACTTAG---C---CACTACGGATTTTTTGGTA  414

Query  444  GATAATCCTACTGGCACTTCCATGGACCCTTCATGGAGTATGGACATCAATGATGGTCAT  503
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct  415  GATAATCCTACCGGCACTTCCATGGACCCTTCATGGAGTATGGACATCAATGATGG---T  471

Query  504  CATCATGATCATTACAATAATCAGGTGGAACACATTGTGGAGGAATGTGGTTATAATGGC  563
            |||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  472  CATCATGATCATTATATTAATCCGGTGGAACACATTGTGGAGGAATGTGGTTATAATGGC  531

Query  564  TTGCCTCCATTTCCTGGTGAAGAGCTTCTCTCTTTAGACACTAATGGTGTTTGGTCTGAT  623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  532  TTGCCTCCATTTCCTGGTGAAGAGCTTCTCTCTTTAGACACTAATGGTGTTTGGTCTGAT  591

Query  624  GCTTTGTTGATTGGCCATAACCACGTAGATGTTGGTGTGACTCCGGCTCAGGCTGTACAC  683
            |||||||||||||| |||||||| ||||| ||||| |||||||||| |||||||||||||
Sbjct  592  GCTTTGTTGATTGGTCATAACCATGTAGACGTTGGCGTGACTCCGGTTCAGGCTGTACAC  651

Query  684  GACCCGGTGGTTCATTTCGCTGATGAATCCAATGATTCCACCAACCTCTTGTTTGGAAGT  743
            || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  652  GAACCGGTGGTTCATTTCGCTGACGAATCCAATGATTCCACCAATCTCTTGTTTGGAAGT  711

Query  744  TGGAGCCCTTTTGATTTCACGGCCGATGGATGA  776
            |||||||||||||||||||| ||||||||||||
Sbjct  712  TGGAGCCCTTTTGATTTCACTGCCGATGGATGA  744


> AT5G65590.1 | Symbols:  | Dof-type zinc finger DNA-binding family 
protein | chr5:26211746-26213136 REVERSE LENGTH=1391
Length=1391

 Score = 69.4 bits (37),  Expect = 5e-11
 Identities = 57/66 (86%), Gaps = 3/66 (5%)
 Strand=Plus/Plus

Query  119  CTCC-AACACAAAGTTCTGTTACTACAACAACTATAGCCTAACTCAGCCTCG-CTACTTT  176
            |||| ||||||||||||||||||||||||||||| || ||  |||| ||||| | |||| 
Sbjct  245  CTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCGTC-ACTTC  303

Query  177  TGCAAA  182
            ||||||
Sbjct  304  TGCAAA  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38830995631


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5