BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938125
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52460.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1376 0.0
> AT3G52460.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:19446970-19447872 FORWARD LENGTH=903
Length=903
Score = 1376 bits (745), Expect = 0.0
Identities = 853/903 (94%), Gaps = 15/903 (2%)
Strand=Plus/Plus
Query 21 ATGCCTTCTCCTCCAGAAGAAGAAACTCAACCCAAACCCGATACGGGTCCGGGTCAAACC 80
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 ATGCCTTCTCCTCCGGAAGAAGAAACCCAACCCAAACCCGATACGGGTCCGGGTCAAAAC 60
Query 81 TCCGAACGCGATACTAATCAACCACAACAACCTCCGCCACAATCTCAACCGCCTCCA--- 137
||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||
Sbjct 61 TCCGAACGCGATATTAATCAACCACCACCACCTCCACCACAATCTCAACCGCCTCCACCG 120
Query 138 C---CGCAA-A-C--A--TACCCGCCGGTAATGGGCTATCCAGGCTACCACCAA--GCC- 185
| ||||| | | | |||||||||||||||||||||||||||||||| ||| |||
Sbjct 121 CAGACGCAACAGCAAACGTACCCGCCGGTAATGGGCTATCCAGGCTACCATCAACCGCCT 180
Query 186 CCACCATACCCAAATTATCCAAACGCTCCTTACCAACAATACCCTTACGCTCAAGCCCCA 245
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 CCACCATACCCAAATTATCCAAACGCACCTTACCAACAATACCCTTACGCACAAGCCCCA 240
Query 246 CCCGCTTCATATTACGGGTCATCTTACCCGGCTCAGCAAAACCCGGTTTACCAAAGACCC 305
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CCCGCTTCATATTACGGTTCATCTTACCCGGCTCAGCAAAATCCGGTTTACCAAAGACCA 300
Query 306 GCTTCGTCCGGTTTCGTCAGAGGAATTTTCACCGGTTTAATCGTTATAGTCGTCCTCCTC 365
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GCTTCGTCCGGGTTCGTCAGAGGAATTTTCACCGGTTTAATCGTTTTAGTCGTCCTCCTC 360
Query 366 TGCATCTCCACCACCATAACGTGGCTAATCCTCCGTCCTCGAATCCCGCTTTTCTCCGTA 425
||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 361 TGCATCTCCACCACCATAACGTGGCTAGTCCTCCGTCCTCAAATACCGCTTTTCTCCGTA 420
Query 426 AACAATTTCTCAGTTTCCAATTTCAACGTAACCGGTCCGGTTTTCTCCGCGCAATGGACG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACAATTTCTCAGTTTCCAATTTCAACGTAACCGGTCCGGTTTTCTCCGCGCAATGGACG 480
Query 486 GCGAATCTCACAATCGAGAATCAAAACACGAAATTGAAAGGCTACTTTGATCGAATTCAA 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GCGAATCTCACAATCGAGAATCAAAACACGAAATTGAAAGGCTACTTTGATCGAATCCAA 540
Query 546 GGTTTAATCTATCACCAAAACGCAGTCGGAGAAGATGATTTTTTAGCGACGGCGTTTTTT 605
|||||| | || ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 541 GGTTTAGTATACCACCAAAACGCGGTCGGAGAAGACGAATTTTTAGCGACGGCGTTTTTT 600
Query 606 CAACCGGTTTTCGTGGAGACCAAGAAATCGGTTGTGATCGGAGAAACATTAACGGCGGGA 665
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 601 CAACCGGTTTTCGTGGAGACCAAGAAATCGGTTGTGATCGGAGAAACTTTGACCGCGGGA 660
Query 666 GATAAAGAACAACCGAAAGTTCCGAGTTGGGTTGGTGAAGAGATGAAGAAAGAGAGAGAG 725
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 661 GATAAAGAACAACCGAAAGTTCCGAGTTGGGTTGTTGATGAGATGAAGAAAGAGAGAGAG 720
Query 726 ACCGGAACGGTGACGTTTAACCTGAGAATGGCCGTGTGGGTTACTTTTAAGACCCATGGT 785
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 721 ACCGGAACGGTGACGTTTAGCCTGAGAATGGCCGTGTGGGTTACTTTTAAGACCGATGGT 780
Query 786 TGGGCGGCGCGTGAGAGAGGGCTTAAGGTGTTTTGCGGGAAATTAAAAGTTGGGTTTGAA 845
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGGCGGCGCGTGAGAGCGGGCTTAAGGTGTTTTGCGGGAAATTAAAAGTTGGGTTTGAA 840
Query 846 GGAAATTCTGGAAACGGTGCCGTTTTGTTACCTAAGCCTCTTCCTTGTGTGGTTTACGTT 905
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 GGAATTTCTGGAAACGGTGCCGTTTTGTTGCCTAAGCCTCTTCCTTGTGTGGTTTACGTT 900
Query 906 TGA 908
|||
Sbjct 901 TGA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5