BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938134 Length=1076 Score E Sequences producing significant alignments: (Bits) Value AT3G52510.1 | Symbols: | F-box associated ubiquitination effec... 316 2e-85 > AT3G52510.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:19469652-19470378 REVERSE LENGTH=651 Length=651 Score = 316 bits (171), Expect = 2e-85 Identities = 391/493 (79%), Gaps = 31/493 (6%) Strand=Plus/Plus Query 520 TGCTTAGCACAGTTTGGGAGGAGAGCAA-GAGAGA-GGGCATAGTGAGATTCGAGCATC- 576 ||||| ||| ||||||||||| |||||| || ||| ||||| | |||||| |||||||| Sbjct 77 TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGA-AGATGGGCAGA-TGAGATCCGAGCATCA 134 Query 577 AGATGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTTATAGCA-C-CA--T--TC 630 || ||||||||||||||||||||||||||||||||| |||||||||| | | | || Sbjct 135 AG-TGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGCTCCTCCTC 193 Query 631 CTCCTC--C-TCCTTACTCACAAGGTATCTCCATCGATGGTGTTTTGTATTATGGAGC-- 685 |||||| | ||||| ||||||||||||||||||| | ||| | ||||| |||||||| Sbjct 194 CTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGCAG 253 Query 686 -TTGGGTTGATA-AGAATAGATGTGTGCTCATGAGTTTTAACTTGAGTTCTGAAGAGTTT 743 |||||||||| | |||| |||||||||| |||||||| |||||| || |||||| || Sbjct 254 CTTGGGTTGATGCA-AATAAATGTGTGCTCGTGAGTTTTGACTTGACTTTTGAAGAATTC 312 Query 744 AATTTGATTGAACTACCCGTTGAGGCTGGCATCATCTGGCACACG-ACTCGCGCGAATCT 802 ||||||||||| |||| || |||||||| ||||| |||||| | | ||| || || || Sbjct 313 AATTTGATTGAGTTACCTGTAGAGGCTGGTATCATTTGGCACTCATA-TCGTGCTAACCT 371 Query 803 CATCAACTACAGAGGCAAATTA-ACTGTTTTTGAGTACTCCCGATTTGCG-TCTGATGCG 860 | | |||||||||| ||||||| | | |||| || ||||| | ||||| | ||||||| Sbjct 372 CGTTAACTACAGAGACAAATTAGA-TATTTTCGAATACTCTAAACTTGCGGT-TGATGCG 429 Query 861 AGCGTGGATTTATGGGTTATGGAGAATGC-AGG--GAAGAAAAAGTGGTCAAACAAGACT 917 || || || || ||||||||||| ||| | | |||||| ||||||||||| || ||| Sbjct 430 AGTGTAGACCTAAGGGTTATGGAGGATGTGAAGAAGAAGAAGAAGTGGTCAAAAAAAACT 489 Query 918 GTGGTATTGCCTCTTT-CTCAGATGAATTTTGCCCCTAGCGATAAGTTGGGGATGCAAGG 976 |||| ||||| ||| | || |||||| ||| || | ||||| | |||| | ||| || Sbjct 490 TTGGTCTTGCCACTTGAC-CAAATGAATGTTGTCCATGGCGATGACTTGGTGCTGCCCGG 548 Query 977 CACGAGCCGTTGC 989 |||||| || ||| Sbjct 549 CACGAGTCGCTGC 561 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52710572250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5