BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938134

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52510.1 | Symbols:  | F-box associated ubiquitination effec...   316    2e-85


> AT3G52510.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:19469652-19470378 REVERSE LENGTH=651
Length=651

 Score =  316 bits (171),  Expect = 2e-85
 Identities = 391/493 (79%), Gaps = 31/493 (6%)
 Strand=Plus/Plus

Query  520  TGCTTAGCACAGTTTGGGAGGAGAGCAA-GAGAGA-GGGCATAGTGAGATTCGAGCATC-  576
            ||||| ||| ||||||||||| |||||| || ||| ||||| | |||||| |||||||| 
Sbjct  77   TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGA-AGATGGGCAGA-TGAGATCCGAGCATCA  134

Query  577  AGATGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTTATAGCA-C-CA--T--TC  630
            || |||||||||||||||||||||||||||||||||  |||||||||| | |   |  ||
Sbjct  135  AG-TGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGCTCCTCCTC  193

Query  631  CTCCTC--C-TCCTTACTCACAAGGTATCTCCATCGATGGTGTTTTGTATTATGGAGC--  685
            ||||||  | ||||| ||||||||||||||||||| | ||| | ||||| ||||||||  
Sbjct  194  CTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGCAG  253

Query  686  -TTGGGTTGATA-AGAATAGATGTGTGCTCATGAGTTTTAACTTGAGTTCTGAAGAGTTT  743
             ||||||||||  | |||| |||||||||| |||||||| |||||| || |||||| || 
Sbjct  254  CTTGGGTTGATGCA-AATAAATGTGTGCTCGTGAGTTTTGACTTGACTTTTGAAGAATTC  312

Query  744  AATTTGATTGAACTACCCGTTGAGGCTGGCATCATCTGGCACACG-ACTCGCGCGAATCT  802
            |||||||||||  |||| || |||||||| ||||| |||||| |  | ||| || || ||
Sbjct  313  AATTTGATTGAGTTACCTGTAGAGGCTGGTATCATTTGGCACTCATA-TCGTGCTAACCT  371

Query  803  CATCAACTACAGAGGCAAATTA-ACTGTTTTTGAGTACTCCCGATTTGCG-TCTGATGCG  860
            | | |||||||||| ||||||| | | |||| || |||||   | ||||| | |||||||
Sbjct  372  CGTTAACTACAGAGACAAATTAGA-TATTTTCGAATACTCTAAACTTGCGGT-TGATGCG  429

Query  861  AGCGTGGATTTATGGGTTATGGAGAATGC-AGG--GAAGAAAAAGTGGTCAAACAAGACT  917
            || || ||  || ||||||||||| |||  | |  |||||| ||||||||||| || |||
Sbjct  430  AGTGTAGACCTAAGGGTTATGGAGGATGTGAAGAAGAAGAAGAAGTGGTCAAAAAAAACT  489

Query  918  GTGGTATTGCCTCTTT-CTCAGATGAATTTTGCCCCTAGCGATAAGTTGGGGATGCAAGG  976
             |||| ||||| |||  | || |||||| ||| || | ||||| | |||| | |||  ||
Sbjct  490  TTGGTCTTGCCACTTGAC-CAAATGAATGTTGTCCATGGCGATGACTTGGTGCTGCCCGG  548

Query  977  CACGAGCCGTTGC  989
            |||||| || |||
Sbjct  549  CACGAGTCGCTGC  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52710572250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5