BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938136

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52525.1 | Symbols: ATOFP6, OFP6 | ovate family protein 6 | ...   737    0.0  


> AT3G52525.1 | Symbols: ATOFP6, OFP6 | ovate family protein 6 
| chr3:19475159-19475961 FORWARD LENGTH=803
Length=803

 Score =  737 bits (399),  Expect = 0.0
 Identities = 457/485 (94%), Gaps = 3/485 (1%)
 Strand=Plus/Plus

Query  21   ATGGCGGCTAAAAGCAAGAAGAAGATCCTGAAGACTGTCTCTGTTGTCGACATCAGCTGC  80
            |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATGGCGACTAAAAGCAAGAAGAAGATCCTGAAGACTGTATCTGTTGTCGACATCAGCTGC  60

Query  81   GGCAACTGTATAAAACCAACATTCTCCTCTATTTTCCACTTTTTCTCCAAAAAGCCCAAA  140
            |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||
Sbjct  61   GGCAACTGTATAAAACCAACTTTCGCCTCTATTTTCAACTTTTTCTCCAAAAAGCCTAAA  120

Query  141  CGTCCCTCCTCTAATTACCGTCACTGTCACTCCTCCATCTCCTCAGCCACACCCTCCTCC  200
            |||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  121  CGTCCCTCGTCTACTTACCGTCACTGCCACTCCTCCATCTCCTCCGCCACACCCTCCTCC  180

Query  201  ACACCGCTAGCCACCGC-TGCCATCGCCGTCGAGAAAGATTCCGACGATCCTTACCTAGA  259
            || ||  | |||||||| | || ||||||| ||||||||||| |||||||| ||||||||
Sbjct  181  ACGCCTTTGGCCACCGCAT-CCGTCGCCGTGGAGAAAGATTCTGACGATCCGTACCTAGA  239

Query  260  TTTCCGGCAGTCTATGCTTCAAATGATACTAGAGAACCAGATTTACTCGAAAGATGAACT  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TTTCCGGCAGTCTATGCTTCAAATGATACTAGAGAACCAGATTTACTCGAAAGATGAACT  299

Query  320  CAGAGAGCTTCTTCAGTGCTTCCTCAGCCTCAATTCACACTATCATCACGGCATCATCGT  379
             |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct  300  TAGAGAGCTTCTTCAATGTTTCCTCAGCCTCAATTCTCACTATCATCACGGCATCATCGT  359

Query  380  TCGTGCCTTCTCGGAAATATGGGAAGACGTTTCCTCCGCCGCCGCTTCCGCCGTCGAAGC  439
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  360  CCGTGCCTTCTCGGAAATATGGGAAGACGTTTCCTCCGCCGCTGCTTCCGCCGTCGAAGC  419

Query  440  GTCCCCTCTCTTCACCCGTCATGTGTCACGTGCGTCACGTGATTACTATAACTATTACTA  499
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  GTCCCCTCTCATCACCCGTCATGTGTCACGTGCGTCACGTGATTACTATAACTATTACTA  479

Query  500  GGCTA  504
            | |||
Sbjct  480  G-CTA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5