BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938143
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52540.1 | Symbols: ATOFP18, OFP18 | ovate family protein 18... 1242 0.0
AT3G52550.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 99.0 7e-20
> AT3G52540.1 | Symbols: ATOFP18, OFP18 | ovate family protein
18 | chr3:19488546-19489850 REVERSE LENGTH=1305
Length=1305
Score = 1242 bits (672), Expect = 0.0
Identities = 807/871 (93%), Gaps = 13/871 (1%)
Strand=Plus/Plus
Query 20 AATGGTAAGGAAAATGAAATTCCCATTTCTAAACAAGAACActtcatcttcatcattttc 79
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 286 AATGGTAAGGAAAATGAAACTCCCATTTCTAAACAAGAACACATCATCTTCATCATTTTC 345
Query 80 ttcaaattcatcatcttcttcctcttcatggccatggccttcttGTCATCAACAAAACCT 139
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 346 TTCAAATTCATCATCTTCTTCCTCTTCGTGGCCATGGCCTTCCTCTCATCAACAAAACCT 405
Query 140 TAAAACAACAATATCTTCCAAAGCTTCCTTCATCGTTAACAAACCTAAACATGTCTACGA 199
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 406 TAAAACAA---TATCTTCCAAAGCTTCCTTCATCGTTAACAAACCTAAAGATGTCTACGA 462
Query 200 ATCCGAGCCACCACCAAGAAGCTTCTCCTCATCACCCTC-T--TCCTCCTACTCCTCCTT 256
| ||||||||||||| |||||||||||||| || ||||| | ||||||||||| |||||
Sbjct 463 ACCCGAGCCACCACCGAGAAGCTTCTCCTCCTCCCCCTCCTCCTCCTCCTACTCTTCCTT 522
Query 257 CTCCTCTACCAGCCATGCCATGGAAAATCCTCCGGAGATAGAGTCTATAGAGAATGTGAT 316
||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||
Sbjct 523 CTCCTCTACAAGCCATGCTATAGAAAATCCACCAGAGATAGAGTCTATAGAGAATGTGAT 582
Query 317 CAAAGGGA-TAAAATCATCGAAAAGACTCATATTCGAACAGAGAGGAACATCGAACTCTA 375
||||| | ||||||||||||| |||||||| || |||| ||||||||||||||||||||
Sbjct 583 TAAAGG-ACTAAAATCATCGAAGAGACTCATCTTTGAACGGAGAGGAACATCGAACTCTA 641
Query 376 TACTCGAAGACGCCACCaagagagaagatcacgaagaagaagaagaC--TTCA-TGCTCT 432
|||||||||| || ||||||||||| ||||| ||||||||||| ||| || | ||||||
Sbjct 642 TACTCGAAGAAGCTACCAAGAGAGACGATCATGAAGAAGAAGAGGACGGTTTAATGCTCT 701
Query 433 TGTCCTTGGAATCAAACGATCCTTACTCTGATTTCAAGAACTCAATGGAAAAGATGGTTG 492
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 702 TGTCCTTGGAGTCAAACGATCCTTACACTGATTTCAAGAACTCAATGGAAAAGATGGTTG 761
Query 493 AAGCACACGTGCTTCATCATGACTGGATAAGCCTAGAGAAACTTCTCTTTTGGTTCTTGA 552
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 762 AAGTACACGTGCTTCATCATGACTGGATAAGCCTGGAGAAACTTCTCTTTTGGTTCTTGA 821
Query 553 AAGTCAACGTCAAGACCAGCCATAGATACATCTTCGCCGCCTTCGTCGATTTGGTCTTAA 612
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 822 AAGTCAACGTCAAGGCAAGCCATAGATACATCTTCGCCGCCTTTGTCGATTTGGTCTTAA 881
Query 613 ACTTAGCAGTAGGACCTTCTAAAGATGTCG-TCGGAGAGCCTAATTCCGACGTCGTAGTC 671
||||||||||||| |||||||||||||| | | ||||| ||||||||||||||||| ||
Sbjct 882 ACTTAGCAGTAGGGCCTTCTAAAGATGTTGCT-GGAGAACCTAATTCCGACGTCGTCGTG 940
Query 672 GAGGATTCTCTTTCATCTTCGTGGCCGGTCTCCTTGTACTCATCCTCCGATGAGACCTCG 731
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 941 GAGGATTCTCTTTCATCTTCGTGGCCGGTCTCGTTGTACTCGTCCTCCGATGAGAATTCG 1000
Query 732 TCGACGTCCGTACGACTCTTGCCGGAGACTTCGATAGGCGAGAAGAGTAGAGACGTTTGT 791
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1001 TCGACGTCCGTACGATTCTTGCCGGAGACTTCGATAGGCGAGAAGGGTAGAGACGTTTGT 1060
Query 792 TGTTTATCGTCATTGTTTGAGTTAGAAGAGAAGATTAAAGACAACATTGATTCAAATGGT 851
||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| |
Sbjct 1061 TGTTTATCGTCGTTGTTTGAGTTAGAAGAAAAGATTAAAGACAATATTGATCCAAATGAT 1120
Query 852 TATGTATCTTCTTAATTCCTTCATTTGATAA 882
||||||||||||||||| |||||||||||||
Sbjct 1121 TATGTATCTTCTTAATTTCTTCATTTGATAA 1151
> AT3G52550.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: ovate family protein 18 (TAIR:AT3G52540.1); Has 5496
Blast hits to 1338 proteins in 151 species: Archae - 0; Bacteria
- 23; Metazoa - 3754; Fungi - 379; Plants - 301; Viruses
- 154; Other Eukaryotes - 885 (source: NCBI BLink). | chr3:19492106-19492935
REVERSE LENGTH=830
Length=830
Score = 99.0 bits (53), Expect = 7e-20
Identities = 86/101 (85%), Gaps = 6/101 (6%)
Strand=Plus/Plus
Query 288 CCGGAGATAGAGTCTATAGAGAATGTGATCAAAGGGATAAAATCATC-GAAAAGACTCAT 346
||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 327 CCGGAGACCGAGTCCATAGAGAATGTGATCAAAGGGATAAAATCATCAGAAA-GACTCAT 385
Query 347 ATTCGAACAG-AGAGGA-ACATCGAACTCTATACTCGAAGA 385
|| |||| | | |||| | ||| |||||||| || |||||
Sbjct 386 CTTTGAAC-GTAAAGGAGA-ATCAAACTCTATTCTTGAAGA 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5