BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938144
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52550.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 776 0.0
> AT3G52550.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: ovate family protein 18 (TAIR:AT3G52540.1); Has 5496
Blast hits to 1338 proteins in 151 species: Archae - 0; Bacteria
- 23; Metazoa - 3754; Fungi - 379; Plants - 301; Viruses
- 154; Other Eukaryotes - 885 (source: NCBI BLink). | chr3:19492106-19492935
REVERSE LENGTH=830
Length=830
Score = 776 bits (420), Expect = 0.0
Identities = 535/587 (91%), Gaps = 22/587 (4%)
Strand=Plus/Plus
Query 1 AACAACAAAGGGGGaaaaa-aaTGAAAGTCCCATTTTTTAACAAGAGTTTTTCATCTTCA 59
||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 3 AACAACAAAGGTGGAAAAATTATGAAAGTCCCATTTTTAAACAAGAGTTTTTCATCTTCA 62
Query 60 TGTTATTCAAATTCAAATTCATCATCATGGGCATGGCCTTCTTGTCACCAAAACCCTAGA 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 63 TGTTATTCAAATTCAAATTCATCATCATGGGGATGGCCTTCTTGTCACCAAAACCCTAGA 122
Query 120 ACACAATCTTTCAGAGTCACCATCAGTGCAATCAACCCTAATGACGTCGAAGATgaagag 179
|| |||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 123 ACTCAATCTTTCAGAATCACCATCAGCACAATCAACCCTTATGACGCCGAAGATGAAGAG 182
Query 180 gaggaggaggataaggaagaggaagaggaggaggaggaaaagagggaggaa-ggaaagg- 237
|||||||||||||||||||| | | |||| || ||||||| ||||| ||| | |||||
Sbjct 183 GAGGAGGAGGATAAGGAAGA-G-A-AGGA-GA--AGGAAAAAAGGGA-GAATGAAAAGGA 235
Query 238 a-a-gaggaggaTGAAAA-TCTGCTTCCTGACATCATTATCTCCT-CCCCATCCTCCTCC 293
| | |||||||| ||||| || |||||||| |||||| || |||| | |||| ||||||
Sbjct 236 AGAGGAGGAGGAGGAAAATTC-GCTTCCTGGCATCATGAT-TCCTACATCATCATCCTCC 293
Query 294 ATCTCATCCAACATCGACGCCATAGAAGAGCTGCCGGAGACCGAATCCATAGAGAATGTG 353
|||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 294 ATCTCATCCACCATCGACACCATAGAAGAGGTGCCGGAGACCGAGTCCATAGAGAATGTG 353
Query 354 ATCAAAGGGATAAAATCATCAAAAAGACTCATCTTTGAACGTAAAGGAGAATCAAACTCA 413
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 354 ATCAAAGGGATAAAATCATCAGAAAGACTCATCTTTGAACGTAAAGGAGAATCAAACTCT 413
Query 414 ATTCTCGAAGAGATGAGGAACAAGGATTCATTCTCTTGTCCTTGGAATCCAACTACACTT 473
||||| ||||||||||||||||||||||||| | ||||||||||||||||| | ||||||
Sbjct 414 ATTCTTGAAGAGATGAGGAACAAGGATTCATGCACTTGTCCTTGGAATCCATCCACACTT 473
Query 474 TCTCTAATTTCAAGTGGTTCATGGTGGAGGTGGTTGCGGTACACTCGCTTTATCGCGGCT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 474 TCTCTAATTTCAAGTGGTTCATGGTGGAGGTGGTTGCGGTACACTCGCTT---CGC---T 527
Query 534 ACACCCAATTGTATCGTGAAAACTACTGAATAGATCATTGATATATA 580
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ACATCCAATTGTATCGTGAAAACTACTGAATAGATCATTGATATATA 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5