BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938148
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein ... 758 0.0
AT2G36160.1 | Symbols: | Ribosomal protein S11 family protein ... 549 9e-156
> AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein
| chr3:19503223-19504973 FORWARD LENGTH=826
Length=826
Score = 758 bits (410), Expect = 0.0
Identities = 463/488 (95%), Gaps = 5/488 (1%)
Strand=Plus/Plus
Query 7 CTCTGTTCCAAACCATGTCGAAGAGAAAGACAAAAGAGCCAAAGGTTGAG-ACAT--CTC 63
||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||
Sbjct 88 CTCTGTTCCAAACCATGTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGAGAATGTGACTC 147
Query 64 TTGGACCAACTGTTCGTGAAGGAGAG-AACGTCTTTGGAGTTGTTCACATCTTTGCTTCA 122
|||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 148 TTGGACCAGCTGTTCGTGAAGGAGAGCAA-GTCTTTGGAGTTGTTCACGTCTTTGCTTCA 206
Query 123 TTCAACGACACTTTCATTCACGTGACTGATCTGTCTGGACGGGAAACACTTGTTCGCATC 182
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 207 TTCAACGACACTTTCATTCACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATC 266
Query 183 ACTGGTGGAATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCAGCTATGCTT 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 267 ACTGGTGGAATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCTGCTATGCTT 326
Query 243 GCTGCACAAGATGTCGCTCAGCGATGCAAGGAACTTGGAGTCACTGCGATACATGTGATG 302
|| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 327 GCGGCACAAGATGTTGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAA 386
Query 303 CTCCGTGCCACTGGTGGAAACAAGACAAAGACCCCTGGACCTGGTGCTCAGTCTGCCCTA 362
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 387 CTCCGTGCCACTGGTGGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTA 446
Query 363 AGAGCCCTTGCTCGTTCTGGCATGAAAATTGGCCGCATTGAGGATGTGACTCCAATCCCA 422
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 447 AGAGCCCTTGCCCGTTCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAATCCCA 506
Query 423 ACCGACAGTACCCGCAGAAAGAGTGGAAGAAGAGGAAGGAGGCTGTGAGTTATTTGGCCT 482
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 507 ACCGACAGTACCCGCAGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGAGTTATTTGGCCT 566
Query 483 CTCGTTGG 490
||||||||
Sbjct 567 CTCGTTGG 574
> AT2G36160.1 | Symbols: | Ribosomal protein S11 family protein
| chr2:15169818-15171353 FORWARD LENGTH=754
Length=754
Score = 549 bits (297), Expect = 9e-156
Identities = 412/467 (88%), Gaps = 10/467 (2%)
Strand=Plus/Plus
Query 17 AACCATGTCGAAGAGAAAGACAAAAGAGCCAAAGGTTGA-GACAT--CTCTTGGACCAAC 73
||||||||| ||||||||||| |||||||||||||| || | | ||||||||||| |
Sbjct 104 AACCATGTCAAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTGGACCATC 163
Query 74 TGTTCGTGAAGGAGAG-AACGTCTTT-GGAGTTGTTCACATCTTTGCTTCATTCAACGAC 131
||||||||| |||||| || || ||| || ||||| ||||||||||||||||||||||||
Sbjct 164 TGTTCGTGAGGGAGAGCAA-GT-TTTCGGTGTTGTCCACATCTTTGCTTCATTCAACGAC 221
Query 132 ACTTTCATTCACGTGACTGATCTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGA 191
||||||||||| || |||||| ||||||| || ||||| ||||| || ||||| ||||||
Sbjct 222 ACTTTCATTCATGTTACTGATTTGTCTGGTCGTGAAACTCTTGTCCGTATCACCGGTGGA 281
Query 192 ATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCAGCTATGCTTGCTGCACAA 251
|||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||
Sbjct 282 ATGAAGGTGAAAGCTGATAGAGATGAGTCCTCACCTTACGCAGCTATGCTTGCAGCACAG 341
Query 252 GATGTCGCTCAGCGATGCAAGGAACTTGG-AGTCACTGCGATACATGTGATGCTCCGTGC 310
||||| ||||||||||||||||||||||| | ||||||| || ||||||| |||||||||
Sbjct 342 GATGTTGCTCAGCGATGCAAGGAACTTGGTA-TCACTGCCATGCATGTGAAGCTCCGTGC 400
Query 311 CACTGGTGGAAACAAGACAAAGACCCCTGGACCTGGTGCTCAGTCTGCCCTAAGAGCCCT 370
||| |||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 401 CACAGGTGGAAACAAGACCAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTAGAGCCCT 460
Query 371 TGCTCGTTCTGGCATGAAAATTGGCCGCATTGAGGATGTGACTCCAATCCCAACCGACAG 430
||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 461 TGCTCGTTCCGGCATGAAAATAGGCCGTATTGAGGATGTTACTCCCATCCCAACAGACAG 520
Query 431 TACCCGCAGAAAGAGTGGAAGAAGAGGAAGGAGGCTGTGAGTTATTT 477
||||||||||||| |||| ||||||||||| ||||| |||||| |||
Sbjct 521 TACCCGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTT-TTT 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23358878355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5