BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938151
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52610.1 | Symbols: | unknown protein; Has 68 Blast hits to... 2200 0.0
AT3G52605.1 | Symbols: | other RNA | chr3:19510344-19511335 RE... 555 6e-157
> AT3G52610.1 | Symbols: | unknown protein; Has 68 Blast hits
to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa
- 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr3:19510446-19512658 FORWARD
LENGTH=1606
Length=1606
Score = 2200 bits (1191), Expect = 0.0
Identities = 1369/1453 (94%), Gaps = 19/1453 (1%)
Strand=Plus/Plus
Query 19 ATAATGAGTGAGCCGAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAG 78
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 ATAATGAGTGAGCCAAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAG 124
Query 79 TACAGCTGGTGCAGAGCCATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTT 138
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TACAGCTGGTGCAGAGCGATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTT 184
Query 139 TCCCGAACACCAAAACTCCAAAATCTCCAAAACACCCTCGACAAACTCCAGATTTACCAT 198
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 185 TCCCGAACACCAAAACTCCAAAATCTCCAAAATACCCTCGACAAACTCCAGATTTACCAC 244
Query 199 CCCACCCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACGCCTTCTCCTTCGTCGTA 258
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 245 CCCACTCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACTCCTTCTCCTTCGTCGTT 304
Query 259 ACGTCCGCCGCCGATTCCCGCGTCGAAATCCAGCCTTTCGATTCCGAATCTACGGCTGAG 318
||||||||||||||||| | |||||||||||| || |||||||||| |||||||||| ||
Sbjct 305 ACGTCCGCCGCCGATTCTCACGTCGAAATCCATCCCTTCGATTCCGTATCTACGGCTCAG 364
Query 319 ATTATCCGAGACAGCGACGATCCTTGCGCTGATCCACACAGGATCATCCTAGAACACGAG 378
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 365 ATCATCCGAGACAGCGACGATCCATGCGCTGATCCACACAGAATCATCCTAGAACACGAG 424
Query 379 CTTAACAAAAACACGTGGATCAATCCACACCGTTGGATTAACTCCGAGTCACGCGTCTTC 438
| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 425 ATGAACAAAAACACGTGGATCAATCCACACCGTTGGATCAAATCCGAGTCACGCGTGTTT 484
Query 439 ATCGTCAGTCTCTACGATCTAACCGACGACGGAGAGCAACGGATACTTACATTTCGGCTG 498
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 485 ATCGTCAGTCTCTACGATCTAACCGACGACGGAGAGCAACGGATACTCACATTTCGGCTG 544
Query 499 AACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGTTTATGAAAGAG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGTTTATGAAAGAG 604
Query 559 ACGGCGGCTGATGGCTGCGAAAACGGTCCC---GT------GAC-G-G-CGGC---GGGA 603
|||||||||||||| | || |||||||||| || ||| | | |||| ||||
Sbjct 605 ACGGCGGCTGATGGTTTCGGAAACGGTCCCGTGGTGGCGGCGACGGAGACGGCGGTGGGA 664
Query 604 TTGGGTTACCCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGAACAAACCGTTCTGGGCG 663
|| ||| | |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 665 TTAGGTAAGGCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGGATAAACCGTTCTGGGCG 724
Query 664 CGTGGGATCGACGTGCTTGGTTACTCGTTGAACGCGTTTCGGTTTACGAATTTGAATTTC 723
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 725 CGTGGCATCGACGTGCTTGGTTACTCGTTAAACGCGTTTCGGTTTTCGAATTTGAATTTC 784
Query 724 GTGGACGCAGAGAATTCGAATCGGAGATCGCAAGTGGTGAGGTTGAAATTGGAAAGAGAT 783
|||||||||||||||||||| |||||||||||| |||||||| | |||||||| ||||||
Sbjct 785 GTGGACGCAGAGAATTCGAACCGGAGATCGCAATTGGTGAGGCTCAAATTGGATAGAGAT 844
Query 784 CAGACTCTCAAACTTGTGGCTGGATGCAAGGCAAGAGGTTTAAAGCTATGGGCGGCATTA 843
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 845 CAGACTCTCAAACTTGTGGCTGGATGCAAGGCAAGAGGGTTAAAGTTATGGGCGGCATTA 904
Query 844 GCAG-CGTCGGGGCTAATCGCTGCGTATTCCTCGAAGAATCCAACGCCATACCAAGGAGA 902
|| | | |||| | ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 905 GC-GTCCTCGGCGTTAATCGCTGCGTATTCCTCGAAGAATCTACCGCCATACCAAGGAGA 963
Query 903 GAAATATGCCGTGGTGACTCTTTCGGATTGTCGTTCCATTCTTGAACCTCCTCTTACTTC 962
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GAAATACGCCGTGGTGACTCTTTCGGATTGTCGTTCCATTCTTGAACCTCCTCTTACTTC 1023
Query 963 TAATGACTTTGGTTTCTACCACGCAGGGATCCTTCACACACACGATTTAACCGGAGAAGA 1022
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1024 AAATGACTTTGGTTTCTACCATGCAGGGATCCTTCATACACACGATTTAACCGGAGAAGA 1083
Query 1023 AACGCTCTGGGACCTAGCAAAAAGATGCTACGACTCGTTCACATCCGCAAAGAACTCGAA 1082
|| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 1084 AAAGCTCTGGGACCTAGCCAAAAGATGCTACGACTCGTTCACATCCTCCAAGAACTCGAA 1143
Query 1083 CAAGCAGTTCACGGATATGTCAGATCTCAATTTCTTAATGTGCAAGGCCATAGAGAATCC 1142
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CAAGCAGTTCACTGATATGTCAGATCTCAATTTCTTAATGTGCAAGGCCATAGAGAATCC 1203
Query 1143 TAATCTCACGCCTTCCTCGTCCT-TGAGAACCGCTTTCATCTCCATATTTGAAGATCCTG 1201
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1204 TAATCTCACGCCTTCCTC-TTCTCTGAGAACCGCTTTCATCTCCATATTTGAAGATCCTG 1262
Query 1202 TTATCGACGAGTCTCCGGAGCCTGAATTGGCTTCTGTTGGGGTGCAAGATTACATCGGAT 1261
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1263 TTATCGACGAGTCTCCAGAGCCTGAATTGGCTTCTCTTGGGGTGCAAGATTACATTGGAT 1322
Query 1262 GCGCATCTATCCACGGGGTTGGACCGTCCGTTGCGGTTTTCGATGCGCTTAGGGACGGAA 1321
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1323 GCGCGTCTATCCACGGGGTTGGACCGTCGGTTGCGGTTTTCGATGCGCTTAGGGATGGAA 1382
Query 1322 AATTGGACTGTGCGTTTGTGTATCCTTCGCCGTTGCATTCAAGAGAGCAGATGGATGGGC 1381
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1383 AATTGGACTGTGCGTTTGTGTATCCTTCGCCATTGCATTCAAGAGAGCAGATGGATGGGC 1442
Query 1382 TGATTCAACATATGAAAACTATTCTTTTGGAAGGATCTGCTTCTTCCTTTTGATTTGTGT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGATTCAACATATGAAAACTATTCTTTTGGAAGGATCTGCTTCTTCCTTTTGATTTGTGT 1502
Query 1442 TTTAACAATCAAA 1454
||| |||||||||
Sbjct 1503 TTTGACAATCAAA 1515
> AT3G52605.1 | Symbols: | other RNA | chr3:19510344-19511335
REVERSE LENGTH=870
Length=870
Score = 555 bits (300), Expect = 6e-157
Identities = 332/348 (95%), Gaps = 0/348 (0%)
Strand=Plus/Minus
Query 19 ATAATGAGTGAGCCGAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAG 78
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATAATGAGTGAGCCAAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAG 645
Query 79 TACAGCTGGTGCAGAGCCATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTT 138
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TACAGCTGGTGCAGAGCGATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTT 585
Query 139 TCCCGAACACCAAAACTCCAAAATCTCCAAAACACCCTCGACAAACTCCAGATTTACCAT 198
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 584 TCCCGAACACCAAAACTCCAAAATCTCCAAAATACCCTCGACAAACTCCAGATTTACCAC 525
Query 199 CCCACCCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACGCCTTCTCCTTCGTCGTA 258
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 524 CCCACTCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACTCCTTCTCCTTCGTCGTT 465
Query 259 ACGTCCGCCGCCGATTCCCGCGTCGAAATCCAGCCTTTCGATTCCGAATCTACGGCTGAG 318
||||||||||||||||| | |||||||||||| || |||||||||| |||||||||| ||
Sbjct 464 ACGTCCGCCGCCGATTCTCACGTCGAAATCCATCCCTTCGATTCCGTATCTACGGCTCAG 405
Query 319 ATTATCCGAGACAGCGACGATCCTTGCGCTGATCCACACAGGATCATC 366
|| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 404 ATCATCCGAGACAGCGACGATCCATGCGCTGATCCACACAGAATCATC 357
Score = 424 bits (229), Expect = 2e-117
Identities = 301/333 (90%), Gaps = 15/333 (5%)
Strand=Plus/Minus
Query 488 CATTTCGGCTGAACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CATTTCGGCTGAACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGT 298
Query 548 TTATGAAAGAGACGGCGGCTGATGGCTGCGAAAACGGTCCC---GT------GAC-G-G- 595
||||||||||||||||||||||||| | || |||||||||| || ||| | |
Sbjct 297 TTATGAAAGAGACGGCGGCTGATGGTTTCGGAAACGGTCCCGTGGTGGCGGCGACGGAGA 238
Query 596 CGGC---GGGATTGGGTTACCCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGAACAAAC 652
|||| |||||| ||| | |||||||||||||||||||||||||||||||| | ||||
Sbjct 237 CGGCGGTGGGATTAGGTAAGGCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGGATAAAC 178
Query 653 CGTTCTGGGCGCGTGGGATCGACGTGCTTGGTTACTCGTTGAACGCGTTTCGGTTTACGA 712
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 177 CGTTCTGGGCGCGTGGCATCGACGTGCTTGGTTACTCGTTAAACGCGTTTCGGTTTTCGA 118
Query 713 ATTTGAATTTCGTGGACGCAGAGAATTCGAATCGGAGATCGCAAGTGGTGAGGTTGAAAT 772
||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||
Sbjct 117 ATTTGAATTTCGTGGACGCAGAGAATTCGAACCGGAGATCGCAATTGGTGAGGCTCAAAT 58
Query 773 TGGAAAGAGATCAGACTCTCAAACTTGTGGCTG 805
|||| ||||||||||||||||||||||||||||
Sbjct 57 TGGATAGAGATCAGACTCTCAAACTTGTGGCTG 25
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71686378260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5