BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938156

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52700.1 | Symbols:  | unknown protein; Has 6 Blast hits to ...   172    9e-43


> AT3G52700.1 | Symbols:  | unknown protein; Has 6 Blast hits to 
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr3:19532196-19538403 REVERSE LENGTH=871
Length=871

 Score =  172 bits (93),  Expect = 9e-43
 Identities = 128/145 (88%), Gaps = 2/145 (1%)
 Strand=Plus/Plus

Query  3    GCCGGAGAAGAAGAAGCAATGCTTGCTGTTTTTGA-GAAGTCGGTGGCCGGCGTGAAGCT  61
            ||| || |||||||| |||||||||||| |||| | ||| ||||||||||||||||||||
Sbjct  97   GCCAGAAAAGAAGAAACAATGCTTGCTG-TTTTCACGAAATCGGTGGCCGGCGTGAAGCT  155

Query  62   TTTTGGGATGACGTTTCTGGTTGGGGAACGTTCGGAGAATCTTCCCACAAATGATTCCGT  121
            ||||||||||| || || ||||  ||||||||||||||||||||||||  |||||||| |
Sbjct  156  TTTTGGGATGATGTATCCGGTTTTGGAACGTTCGGAGAATCTTCCCACTGATGATTCCAT  215

Query  122  ATACGCCATCAAAGAAATTGCAAAG  146
            | |||||||||||||||| ||||||
Sbjct  216  AGACGCCATCAAAGAAATCGCAAAG  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5