BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938157
Length=349
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09930.1 | Symbols: ATOPT2, OPT2 | oligopeptide transporter ... 211 3e-54
> AT1G09930.1 | Symbols: ATOPT2, OPT2 | oligopeptide transporter
2 | chr1:3227490-3230043 REVERSE LENGTH=2205
Length=2205
Score = 211 bits (114), Expect = 3e-54
Identities = 201/239 (84%), Gaps = 22/239 (9%)
Strand=Plus/Plus
Query 106 AGATCGATGTTCTTAGTCTAGTTCAT----A--G-GAT---AGGAGCAGTGAACATACCA 155
|||||||||||||||||| ||||||| | | ||| |||| ||||||| ||| ||
Sbjct 1567 AGATCGATGTTCTTAGTCCAGTTCATAGGAACGGTGATAGCAGGAACAGTGAATATATCA 1626
Query 156 GTGACATGGTACTTGCT----T-AG--G-AAACATCTGTCAGAA--AG--ACTACCTGCA 203
||| ||||||||||||| | || | ||||||||| ||||| || || ||| ||
Sbjct 1627 GTGGCATGGTACTTGCTGACATCAGTAGAAAACATCTGCCAGAAGGAGTTGCTTCCTCCA 1686
Query 204 AACAGTCCATGGACATGTCCAAGTGACAGAGTTTCCTTTAACGCATCAGTGATTTGGGGA 263
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1687 AACAGTCCATGGACATGTCCAAGTGACAGAGTTTTCTTCGACGCATCAGTGATTTGGGGA 1746
Query 264 TTAGTAGGACCCAAGAGAATCTTTGGTCGTCTAGGAAACTACTCTGTACTTAACTGGTT 322
||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||
Sbjct 1747 TTAGTAGGACCCAAGAGAATCTTTGGTCGGCTAGGAAACTACCCTGCACTAAACTGGTT 1805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16337018425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5