BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938160
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52710.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1371 0.0
> AT3G52710.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G36220.1);
Has 64 Blast hits to 64 proteins in 10 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19534585-19536018
FORWARD LENGTH=1434
Length=1434
Score = 1371 bits (742), Expect = 0.0
Identities = 855/909 (94%), Gaps = 10/909 (1%)
Strand=Plus/Plus
Query 12 TTTGA-TTAAATGCCTCAAGTCGTTTCTTCAGTATGTGCCGGTGGCTCTGACCGGAAAAT 70
||||| ||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||
Sbjct 44 TTTGATTTAAATGCCTCAAGTCGTTGCTTCAGCATGTACCGGTGGGTCTGACCGGAAAAT 103
Query 71 CTCATGCGAAACTCTCGCCGACGATAACGAAGACTCAACTCATGACCCGAAGATCCGACC 130
|||||| |||||||| ||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 104 CTCATGTGAAACTCTGGCCGACGATAACGAAGACTCACCTCATAACTCGAAGATCCGACC 163
Query 131 CGTTTCCATCTCCGCCGTCGATTTTCCACCGGAATCTTATTCCTTATCAAAAGAAGCTCA 190
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 164 CGTATCCATCTCCGCCGTCGATTTTCCACCGGAATCTTACTCTTTATCAAAAGAAGCTCA 223
Query 191 GCTCGAATGGCTAAACGACAACGCTTTCTTCGAACGCAAAGAATCACAAAAAGGAAACTC 250
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 224 GCTCGAATGGCTAAACGACAACGCCTTCTTCGAACGCAAAGAATCACAAAAAGGAAACTC 283
Query 251 TTCTGCTCCAAATTCAAATTCGAATCCCAATTCAAACCCTAATTTGAGCTCTCAACGAAT 310
||||||||| || | ||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 284 TTCTGCTCC-AA-T----TTCGAATCCCAATACAAACCCTAATTCGAGCTCTCATCGAAT 337
Query 311 CTCACTCAAATCAAAAGCGTCGATCATCAGATTACCGAAACCGCAGAAGACGTGTTTCAA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CTCACTCAAATCAAAAGCGTCGATCATCAGATTACCGAAACCGCAGAAGACGTGTTTCAA 397
Query 371 CGAAGCGAAGAAACGGAGAAATTGCAGAATCGCGAGGACTTTGATGATTCCGAAACGGAT 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 CGAAGCGAAGAAACGGAGAAATTGCAGAATCGCGAGGACTTTGATGATTCCGAAACGGAT 457
Query 431 CGGGTCGAGATTGAAATCGGATCCTTCGTTATCGGAGCCGTGTTCTCCGAAGGTTTCTTG 490
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 458 CGGGTCGAGATTGAAATCGGATCCTACGTTATCGGAGCCATGTTCTCCCAAGGTTTCTTG 517
Query 491 TATCGGAAGAGTTAGATCTAAACGTGATCGTAGCCGACGAATGCAGAGACAAAAATCCGG 550
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TATCGGAAGGGTTAGATCTAAACGTGATCGTAGCCGACGAATGCAGAGACAAAAATCCGG 577
Query 551 TCGAACCGATTCTTTTAAGGAGAAACCGGTTCGGGTTAAGAAACCTGGTTTTTTCGCTAG 610
||||||| |||| |||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 578 TCGAACCAATTCGTTTAAGGATAAACCGGTTCCGGTTAAGAAGCCTGGTTTTTTCGCTAG 637
Query 611 CTTCAGAGCGATTTTCAGAACCGGAGGCGGTTGCAAAGACTTATCGGCGAGTGGAGTTCA 670
||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 638 CTTCAGAGCTATTTTCAGAACCGGTGGCGGTTGCAAAGACTTATCTGCGAGTGGAGCTCA 697
Query 671 CGCGCCGCGGAGGGATGCCGTAGTCTCTCCGCCGAGAGTTTCGGTGAGAAGGTCGACGGA 730
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 698 CGCGCCTCGGAGGGATGTCGTAGTCTCTCCGCCGAGAGTTTCGGTGAGAAGATCGACGGA 757
Query 731 TATCAGAGGAAGGCTTCCGCCGGAATACGTCGGGAATTCCTCGCCGCCGAGGAATAGTAC 790
||| |||||| |||||||||||| | |||||||||| |||||||||| ||||||||||||
Sbjct 758 TATTAGAGGACGGCTTCCGCCGGGAGACGTCGGGAAATCCTCGCCGCAGAGGAATAGTAC 817
Query 791 CGGTTCGAGAAGATCATCAATTGACGGTGGTGAACCGGTACTGCCTGGTTTAGGTGGGAT 850
||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 818 CGGTTCGAGGAGATCA--A-TTGACGGCGGTGAACCGGTTCTGCCTGGTTTAGGTGGGAT 874
Query 851 GACTCGGTTTACTTCGGGGAGAAGACCGGATTTGTTGGTTGACGTTTGACGTGGCGTGAC 910
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 875 GACTCGGTTTACTTCAGGGAGAAGACCGGATTTGTTGGTTGAAGTTTGACGTGGCGTGAC 934
Query 911 GTGCGGCGT 919
|| ||||||
Sbjct 935 GTACGGCGT 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5