BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938163
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52730.1 | Symbols: | ubiquinol-cytochrome C reductase UQCR... 416 5e-116
> AT3G52730.1 | Symbols: | ubiquinol-cytochrome C reductase UQCRX/QCR9-like
family protein | chr3:19542931-19544264 REVERSE
LENGTH=531
Length=531
Score = 416 bits (225), Expect = 5e-116
Identities = 250/262 (95%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 1 CTGAAAACAAACGATCAATCATGGATTACACTGCTCGGAGAAATCAGAAAGGCGCTTTCG 60
|||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 78 CTGAAAACAACCAATCAATCATGGAGTACGCTGCTCGGAGAAATCAGAAAGGCGCTTTCG 137
Query 61 AAGGCTTTTACAAACTTATCATGCGCCGTAACTCCGTCTACGTCACTTTCATCATCGCCG 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 138 AAGGCTTTTACAAACTTATCATGCGCCGTAATTCCGTCTACGTCACTTTCATCATCGCCG 197
Query 121 GCGCATTTTTCGGCGAACGGGCTGTGGATTACGGTGTTCATAAGCTCTGGGAACGCAACA 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GCGCATTTTTCGGTGAACGGGCTGTGGATTACGGTGTTCATAAGCTCTGGGAACGCAACA 257
Query 181 ATGTTGGGAAACGATATGAAGACATCTCTGTGTTGGGTCAAAGGCCAGTAGAAGAATGAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 258 ATGTTGGGAAACGATATGAAGACATCTCTGTGTTGGGTCAAAGGCCAGTAGAGGAATGAG 317
Query 241 GATTTATCCTTTTTGAAT-CTC 261
||| | |||||||||| |||
Sbjct 318 C-TTTCTTCTTTTTGAATTCTC 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11913456513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5