BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938167
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52770.1 | Symbols: ZPR3 | protein binding | chr3:19557721-1... 372 9e-103
> AT3G52770.1 | Symbols: ZPR3 | protein binding | chr3:19557721-19559007
REVERSE LENGTH=483
Length=483
Score = 372 bits (201), Expect = 9e-103
Identities = 226/238 (95%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 6 AGCAAGAAAGCAAAAATGGAGAGGCTAAACTCAAAGCTGTATGTAGAAAACTGTTACATA 65
|||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 95 AGCAAGAAAGCAGAAATGGAGAGGCTAAACTCGAAGCTGTTTGTTGAAAACTGTTACATA 154
Query 66 ATGAAAGAGAACGAGAGGCTGAGGAAGAAAGCTGAGCTTCTGAATCAAGAGAATCAACAG 125
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 155 ATGAAAGAGAACGAGAGACTAAGGAAGAAAGCTGAGCTTCTGAATCAAGAGAACCAACAG 214
Query 126 CTTTTGTTTCAACTCAAACAAAAACTCTCCAAAACTAAGAACCCTAATAATGGATCAAAC 185
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 215 CTTTTGTTTCAACTCAAACAGAAACTCTCCAAAACTAAGAACTCTAACAATGGATCAAAC 274
Query 186 AATGACAACAAATCAAGCTCTGCTTCTGGACAATCTTGATTTAAAATCAAGAAGACGT 243
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 275 AATGACAACAAATCAAGCTCTGCTTCTGGACAATCTTGATTTAAA-TCAAGAATACGT 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11058904780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5