BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938177

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52860.1 | Symbols:  | unknown protein; Has 86 Blast hits to...   701    0.0  


> AT3G52860.1 | Symbols:  | unknown protein; Has 86 Blast hits 
to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa 
- 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes 
- 4 (source: NCBI BLink). | chr3:19591848-19592767 REVERSE 
LENGTH=647
Length=647

 Score =  701 bits (379),  Expect = 0.0
 Identities = 465/506 (92%), Gaps = 8/506 (2%)
 Strand=Plus/Plus

Query  3    AGATCGAGATTGGCGTTAATGGATTATCAGCAAAAGCCGCCGCCGTCTTCTGACCCTTCG  62
            |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct  9    AGATCGAGATCGGCGTGAATGGATTATCAGCAAAAGCCGCCGCAGTCTTCTGACCCTTCG  68

Query  63   CCGTCTCCGCCTGACCGTCCACCGGGAATTACATCACCGGAAACGCCCTCGAACAATCAG  122
            ||||| ||||||||||||||||||||||| | ||||||||| || |||||||||||||||
Sbjct  69   CCGTCACCGCCTGACCGTCCACCGGGAATCAGATCACCGGAGACCCCCTCGAACAATCAG  128

Query  123  AATCATGACATAGAGGACATTATGGCTTGCGTCACGGCTTTAGAAGCTGCTCTGTTGCCA  182
            ||| ||||||||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct  129  AATAATGACATAGAGGACATTATGGCTTGCGTCACAGCCTTGGAAGCTGCTCTGTTACCA  188

Query  183  TGTTTGCCCGCGAGAGAGCTTCAAGCTATCGACCGCTCTCCTCATCCTTCTCATCAAATT  242
            |||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||
Sbjct  189  TGTTTGCCGGCGAGAGAGCTTCAGGCCATCGATCGCTCTCCTCACCCTTCTCATCAAATT  248

Query  243  GATGTTGAGCGGCACGCCAGAGATTTCATGGAAGCTGCGAAAAAGCTCCAGCTTTATTTC  302
            ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  249  GATGTGGAGCGGCACGCCAGAGATTTCATGGAAGCTGCGAAAAAGCTTCAGCTTTACTTC  308

Query  303  ATGGGATTGAAGCGAGAAGATCGCGCGCCCACAAGAGCTGAAAGCCTTA-GAAAGGAGAT  361
            |||||| | ||||||||||||||||||||| | |||||||||||||||| ||| ||| ||
Sbjct  309  ATGGGACTAAAGCGAGAAGATCGCGCGCCCTCGAGAGCTGAAAGCCTTAAGAA-GGATAT  367

Query  362  TGCAGTAATGGAGGAAGAGCTTAAGACAAAGGATGAGCTTATAAAGAAGCAC-TCAAGGC  420
            |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||
Sbjct  368  TGCAGTAATGGAGGAAGAGCTTAAGACAAAAGATGAGCTTATAAAGAAGCACATGA-GGC  426

Query  421  TTTTCCAAGAATCCCAGAAGCTAGTGAAAGAACAGATTGAGAAACACCGAG-TAGAGCTG  479
            |||||||||| || |||||||| |||||||||||||||||||||||| ||| | ||||||
Sbjct  427  TTTTCCAAGAGTCGCAGAAGCTTGTGAAAGAACAGATTGAGAAACACAGAGAT-GAGCTG  485

Query  480  GAGAAAGTATAACAA-CATCTCAATC  504
            |||||||| |||||| | ||||||||
Sbjct  486  GAGAAAGTTTAACAATC-TCTCAATC  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24464029589


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5