BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938187
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52940.1 | Symbols: FK, HYD2, ELL1 | Ergosterol biosynthesis... 1912 0.0
> AT3G52940.1 | Symbols: FK, HYD2, ELL1 | Ergosterol biosynthesis
ERG4/ERG24 family | chr3:19630198-19633296 REVERSE LENGTH=1465
Length=1465
Score = 1912 bits (1035), Expect = 0.0
Identities = 1116/1153 (97%), Gaps = 14/1153 (1%)
Strand=Plus/Plus
Query 1 GAAAATCCTTCTTCTGCTTAATGCTGCTAGATATGGATCTCGGTGTTCTTCTACCATCTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 165 GAAAATCCTTCTTCTGCTTAATGCTGCTAGATATGGATCTCGGTGTTCTTCT----TC-C 219
Query 61 TTATTCCCTCATTGCAATCTGTTTATGTGCTGGTGTTTTACTTCGTTTACTTGGCCGTTG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 --A-----TCATTGCAATCTGTTTATGTGCTGGTGTTTTACTTCGTTTACTTGGCCGTTG 272
Query 121 CCGGAGAAATTCTCCCCGGGAAAGTTATTCGCGGCGTTCTTTTATCAGATGGCTCTCAAC 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 273 CCGGAGAAATTCTCCCCGGGAAAGTTATTCGCGGCGTCCTTTTATCAGATGGCTCTCAAC 332
Query 181 TTCGTTACCGATGCAATGGTCTATTGGCATTAACATTGTTGGTAGCTATTTTGGGAATCT 240
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 333 TTCGTTACCGATGCAATGGTCTATTGGCACTAATATTGTTGGTAGCTATTTTGGGAATCT 392
Query 241 GTGCAAAACTTGGCATTGTATCACCTCTTGTGGTTGCGGATAGAGGACTTGAGCTACTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 393 GTGCAAAACTTGGCATTGTATCACCTCTTGTGGTTGCGGATAGAGGACTTGAGTTACTCT 452
Query 301 CTGCTACTTTTATTTTCTGTGTTTTGGTGACATTAGCATTGTATGTTACTGGGCGAAATT 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 453 CAGCTACTTTTATTTTCTGTGTTTTGGTGACATTAGCATTGTATGTTACTGGGCGAAGTT 512
Query 361 CTTCCG-ATAAGAGTTCTTCCCTAAAGCCTCATGTCTCAGGAAATCTTGTACATGATTGG 419
| | || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 513 CCT-CGAATAAGGGTTCTTCCCTAAAGCCTCATGTCTCAGGAAATCTTGTACATGACTGG 571
Query 420 TGGTTTGGAATACAGTTGAATCCTCAGTTTATGAGCATCGATCTCAAGTTTTTCTTTGTC 479
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 572 TGGTTTGGAATACAGCTGAATCCTCAGTTTATGAGCATTGATCTCAAGTTTTTCTTTGTC 631
Query 480 AGAGCCGGGATGATGGGATGGCTGCTTATCAATCTCTCTATTCTGGCAAAAAGTGTGCAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGAGCCGGGATGATGGGATGGCTGCTTATCAATCTCTCTATTCTGGCAAAAAGTGTGCAG 691
Query 540 GATGGTTCCTTGAGTCAGTCGATGATTCTTTACCAGATTTTCTGTGCGTTATATATATTG 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 692 GATGGTTCCTTGAGTCAGTCGATGATTCTTTACCAGATCTTCTGTGCGTTATATATATTG 751
Query 600 GACTACTTTGTTCATGAAGAATACATGACCTCTACGTGGGACATAATTGCAGAGAGACTG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GACTACTTTGTTCATGAAGAATACATGACCTCTACGTGGGACATAATTGCAGAGAGACTA 811
Query 660 GGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGGC 871
Query 720 TGGTGGCTTTTGCACAACAAAGTAGAACTAACAGTTCCTGCTATTGTAGCCAATTGCCTT 779
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 872 TGGTGGCTTTTGCACAACAAAGTAGAACTAACAGTTCCTGCGATTGTAGTCAATTGCCTT 931
Query 780 GTCTTCGTGATAGGGTACATGGTTTTTCGAGGGGCTAACAAACAAAAACATATCTTTAAG 839
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 932 GTCTTCTTGATAGGGTACATGGTTTTTCGAGGAGCTAACAAACAAAAACATATCTTTAAG 991
Query 840 AAGAACCCAAAAACACCTATATGGGGCAAGCCTCCAGTGGTAGTTGGTGGAAAGTTACTG 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AAGAACCCAAAAACACCAATATGGGGCAAGCCTCCAGTGGTAGTTGGTGGAAAGTTACTG 1051
Query 900 GCTTCAGGCTATTGGGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCT 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GTTTCAGGCTATTGGGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCT 1111
Query 960 CTGTCCTTCAGTTTGCCCTGTGGAATAAGTTCTCCGGTTCCATATTTCTACCCAATATAT 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1112 CTGTCCTTCAGTTTGCCATGTGGAATAAGTTCTCCGGTTCCATATTTCTACCCGATATAC 1171
Query 1020 CTTCTGATACTATTGATATGGAGAGAACGAAGAGACGAGGTTCGATGTGCAGAGAAGTAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CTTCTGATACTATTGATATGGAGAGAACGAAGAGACGAGGTTCGATGTGCAGAGAAGTAC 1231
Query 1080 AAGGAGATCTGGGCAGAGTATCTTAGACTTGTCCCCTGGAGAATACTTCCTTATGTTTAT 1139
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AAGGAGATATGGGCAGAGTATCTTAGACTTGTCCCCTGGAGAATACTTCCTTATGTTTAT 1291
Query 1140 TAGATGTGCCAAG 1152
|||||||||||||
Sbjct 1292 TAGATGTGCCAAG 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5