BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938189
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36530.1 | Symbols: LOS2, ENO2 | Enolase | chr2:15320756-153... 1535 0.0
> AT2G36530.1 | Symbols: LOS2, ENO2 | Enolase | chr2:15320756-15323869
REVERSE LENGTH=1743
Length=1743
Score = 1535 bits (831), Expect = 0.0
Identities = 1188/1362 (87%), Gaps = 17/1362 (1%)
Strand=Plus/Plus
Query 1 TCTCTAAGATCTAATTGAACTATGGCTACTATCACTGCTGTTAAAGCTAGACAGATCTTC 60
||||| ||||||| | | |||||||||||||||| | |||||| |||||||||||||||
Sbjct 66 TCTCT-AGATCTACTCG--CTATGGCTACTATCACCGTTGTTAAGGCTAGACAGATCTTC 122
Query 61 GACAGCCGTGGCAACCCCACCGTCGAGGTCGATGTCCACACATCCACCGGTGTTAAGGTC 120
||||| ||||| || |||||||| ||||| ||| ||||||| || | ||| |||||||
Sbjct 123 GACAGTCGTGGTAATCCCACCGTTGAGGTTGATATCCACACGTCAAATGGTATTAAGGTT 182
Query 121 AGAGCTGCCGTTCCTAGTGGAGCTTCCACTGGAATCTACGAGGCTCTTGAGCTGAGGGAT 180
| ||| || ||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 183 ACAGCAGCTGTTCCAAGTGGAGCTTCCACTGGTATCTATGAGGCTCTTGAGCTGAGGGAT 242
Query 181 GGAGGATCGGACTACCTTGGAAAAGGTGTTTCAAAGGCTGTTGGAAATGTTAACTCA-AT 239
|||||||| |||||||||||||| ||||| || ||||||||||| ||||| ||| | ||
Sbjct 243 GGAGGATCTGACTACCTTGGAAAGGGTGTATCTAAGGCTGTTGGCAATGTGAAC-AACAT 301
Query 240 CATTGGCCCAGC-GTTGATTGGAAAGGACCCAACTCAGCAAACTGCTATTGATAACTTCA 298
||| || ||||| || ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 302 CATCGGGCCAGCACTT-ATTGGAAAGGACCCAACTCAGCAGACTGCTATTGACAACTTCA 360
Query 299 TGGTTCATGAACTTGATGGGACCCAAAATGAATGGGGTTGGTGCAAGCAAAAGCTTGGAG 358
|||| ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||
Sbjct 361 TGGTCCATGAACTTGACGGAACCCAAAACGAGTGGGGGTGGTGCAAGCAAAAGCTTGGAG 420
Query 359 CCAATGCAATTCTTGCTGTTTCTCTTGCGGTCTGCAAAGCTGGTGCCGTTGTTAATGGCA 418
||||||| ||||||||||| |||||||| |||||||||||||| || ||||| | ||||
Sbjct 421 CCAATGCGATTCTTGCTGTGTCTCTTGCTGTCTGCAAAGCTGGGGCTGTTGTCAGCGGCA 480
Query 419 TTCCTCTCTACAAGCACATCGCCAATCTTGCTGGTAACCCCAAG-TTGATGCTACCAGTT 477
||||||| ||||||||||| ||||| |||||||||||||||||| ||| |||||||||||
Sbjct 481 TTCCTCTATACAAGCACATTGCCAACCTTGCTGGTAACCCCAAGATTG-TGCTACCAGTT 539
Query 478 CCTGCCTTCAATGTCATCAACGGTGGATCTCATGCAGGAAACAAGCTTGCAATGCAAGAG 537
||||||||||| |||||||| |||||||| ||||| |||||||||||||| ||||| |||
Sbjct 540 CCTGCCTTCAACGTCATCAATGGTGGATCCCATGCCGGAAACAAGCTTGCTATGCAGGAG 599
Query 538 TTCATGATTCTCCCTGTTGGAGCTTCATCTTTCAAGGAAGCCATGAAAATGGGTGTGGAA 597
|| ||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 600 TTTATGATCCTCCCTGTTGGAGCTGCTTCTTTCAAGGAAGCCATGAAGATGGGTGTGGAA 659
Query 598 GTCTACCACAACTTGAAGTCTGTGATTAAGAAGAAGTACGGTCAAGATGCAACAAACGTT 657
|| |||||| ||||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 660 GTTTACCACCACTTGAAGTCTGTGATTAAGAAGAAGTACGGCCAGGATGCCACAAATGTT 719
Query 658 GGTGATGAAGGTGGCTTTGCACCAAACATTCAGGAGAACAAGGAAGGTCTCGAACTT-CT 716
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| || ||
Sbjct 720 GGTGATGAAGGTGGGTTTGCACCAAACATTCAGGAGAACAAGGAGGGTCTTGAA-TTGCT 778
Query 717 CAAGACTGCCATCGAGAAGGCTGGATACACTGGCAAGGTGGTCATTGGAATGGATGTTGC 776
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 779 CAAGACTGCTATCGAGAAGGCTGGATACACTGGAAAGGTTGTCATTGGAATGGATGTTGC 838
Query 777 TGCATCCGAGTTTTACTCATCAGACAAGAAATACGACTTGAACTTCAAAGAAGAGAACAA 836
|| || ||||| |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 839 CGCTTCAGAGTTCTACTCAGAAGACAAGACCTACGACTTGAACTTCAAAGAAGAGAACAA 898
Query 837 CGATGGTTCTCAGAAGATCTCTGGAGATGCTCTCAAGGACCTATACAAGTCATTCGTTTC 896
| |||| ||||||||||| ||||| |||||||| |||||||| |||||||| || || |
Sbjct 899 CAATGGCTCTCAGAAGATTTCTGGTGATGCTCTAAAGGACCTGTACAAGTCCTTTGTCGC 958
Query 897 CGAATACCCAATTGTATCCATTGAAGACCCATTTGACCAAGATGACTGGGAGCACTATGC 956
|| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 TGAGTACCCAATCGTGTCCATTGAGGACCCATTTGACCAAGATGACTGGGAGCACTATGC 1018
Query 957 TAAAATGACCGCTGAATGTGGCGAGAAAG-TTCAAATTGTCGGTGATGATTTGCTGGTCA 1015
||| |||||| |||| ||||| | || |||| |||||||||||||||||| ||||||
Sbjct 1019 TAAGATGACCACTGAGTGTGGA-ACCGAGGTTCAGATTGTCGGTGATGATTTGTTGGTCA 1077
Query 1016 CCAATCCCAAGAGGGTTGAGAAGGCAATCA-ATGAAAAGTCTTGCAATGCTCTTCTTTTG 1074
| || |||||||| |||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 1078 CTAACCCCAAGAGAGTTGCTAAGGCAATCGCA-GAGAAGTCTTGCAATGCTCTTCTTTTG 1136
Query 1075 AAGGTTAACCAAATTGGATCAGTAACCGAGAGTATCGAGGCAGTTAAGATGTCAAAGAGA 1134
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 1137 AAGGTTAACCAAATCGGATCTGTAACCGAGAGTATCGAGGCAGTTAAGATGTCGAAGAAA 1196
Query 1135 GCTGGTTGGGGAGTGATGGCTAGCCACCGTAGTGGAGAGACCGAGGACACCTTCATTGCT 1194
|| ||||||||||||||| | |||||| | ||||| || ||||||||||| |||||||||
Sbjct 1197 GCAGGTTGGGGAGTGATGACCAGCCACAGAAGTGGTGAAACCGAGGACACATTCATTGCT 1256
Query 1195 GACTTATCTGTCGGTTTATCAACCGGGCAAATCAAGACGGGAGCTCCTTGCAGATCAGAA 1254
|||||| | || || || || || || |||||||| || || |||||||||||||| ||
Sbjct 1257 GACTTAGCCGTTGGCTTGTCCACTGGACAAATCAAAACCGGTGCTCCTTGCAGATCCGAG 1316
Query 1255 CGTCTGGCCAAATACAATCAGCTATTACGAATTGAAGAGGAGCTTGG-AGCAGACGCAAT 1313
||||| ||||| ||||| ||||| || || ||||| |||||| |||| | |||| |||||
Sbjct 1317 CGTCTTGCCAAGTACAACCAGCTTTTGCGTATTGAGGAGGAG-TTGGGATCAGAGGCAAT 1375
Query 1314 ATATGCAGGAGCCAACTTCCGCAAGCCCGTTGAGCCGTACTA 1355
|| || |||| |||||||||||| || || || || |||||
Sbjct 1376 TTACGCTGGAGTCAACTTCCGCAAACCTGTGGAACCCTACTA 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5