BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938194
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53000.1 | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A1... 1421 0.0
> AT3G53000.1 | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15
| chr3:19654068-19656080 FORWARD LENGTH=1392
Length=1392
Score = 1421 bits (769), Expect = 0.0
Identities = 850/890 (96%), Gaps = 2/890 (0%)
Strand=Plus/Plus
Query 4 GAGAGATAGAGAGAGGTATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTT 63
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GAGATAAAGAGAGAGGTATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTT 253
Query 64 TGGCTATGGGACCTGGTCTCGGCGATATACCGGAAAGCTGCGTCGCTTGTGTGTTTATGT 123
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 254 TGGCTATGGGACCTGGTCTCGGCGATATACCGGAAAGTTGTGTCGCTTGTGTGTTTATGT 313
Query 124 ATCTGACTCCGCCGGAGATTTGCAATCTGGCTGGATTGAATCGTTCATTTCGTGGTGCGG 183
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 314 ATCTGACTCCACCGGAGATTTGCAATCTGGCTGGATTGAATCGTTCTTTTCGTGGTGCGG 373
Query 184 CTTCTTCGGATTCTGTTTGGGAGAAGAAGCTTCCGGCGAATTATCAGGATCTGCTTGATT 243
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 374 CTTCTTCGGATTCTGTTTGGGAAAAGAAGCTTCCGGAGAATTATCAGGATCTGCTTGATT 433
Query 244 TATTACCGCCGGAGAGGTATCATAGTCTCTCGAAGAAGGATATTTTCGCTGTGCTCTCTC 303
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 434 TATTGCCGCCGGAGAGGTATCATAGTCTCTCGAAGAAAGATATCTTCGCTGTGCTTTCTC 493
Query 304 GTCCAATTCCCTTTGATGATGATAATAAGGAACTATGGATTGATAGAGTTACAGGACGAG 363
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 494 GTCCAATTCCTTTTGATGATGATAATAAGGAAGTATGGATTGATAGAGTTACAGGACGAG 553
Query 364 TTTGTATGGCAATTTCTGCTAGAGGAATGGCTATTACTGGAATTGAAGACCGGAGATATT 423
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 554 TTTGTATGGCGATTTCTGCTAGAGGAATGTCTATTACTGGAATTGAAGACCGGAGATATT 613
Query 424 GGAACTGGATTCCGACGGAAGAATCTAGGTTCCATGTTGTAGCTTACTTACAGCAGATTT 483
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 614 GGAACTGGATTCCAACGGAAGAATCTAGGTTCCATGTTGTAGCCTACTTACAGCAGATTT 673
Query 484 GGTGGTTTGAAGTTGATGGAACAGTGAGATTCCATCTCCCACCTGGTATATACTCTCTAT 543
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 674 GGTGGTTTGAAGTTGATGGAACAGTGAGATTCCATCTCCCACCTGGTGTATACTCTCTAT 733
Query 544 CATTCAGAATCCATCTAGGGAGATTCACAAAAAGGCTAGGGAGACGCGTGTGCCACTTTG 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 734 CATTCAGAATCCATCTAGGGAGATTCACAAAAAGGCTAGGGAGACGTGTGTGCCACTTTG 793
Query 604 AACACACTCATGGTTGGGATTTAAAGCCGGTAAGGTTTTCGCTTTCGACCTCTGATGGTC 663
||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 794 AACTCACTCATGGTTGGGATCTAAAGCCGGTAAGGTTTTCGCTTTCGACTTCTGATGGTC 853
Query 664 AAGATGCATCATGTGAATATTACTTGGACGATGTAGAGAGAGACGAAGCACTCAAGCAA- 722
|||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||
Sbjct 854 AAGAAGCATCATGTGAATATTACTTGGACGACGTAGAGAGAAACGAAGCACTTG-GAAAA 912
Query 723 CACAAACGCGGTTGCTGGATAGAGTATAGGGTTGGTGAATTCATAGTGAGTGGATCAGAA 782
||||||||||||| |||||| |||||||||||||| ||||||||||| | ||||||||||
Sbjct 913 CACAAACGCGGTTACTGGATCGAGTATAGGGTTGGAGAATTCATAGTAAATGGATCAGAA 972
Query 783 CCATCGACCGAAATCCAATGGTCGATGAAACAGATTGACTGCACACACTCGAAAGGCGGG 842
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 973 CCATCGACAGAAATCCAATGGTCGATGAAACAGATTGACTGCACGCACTCGAAAGGAGGG 1032
Query 843 TTATGCGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTGAAAGAACA 892
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TTATGTGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTGAAAGAACA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46617288416
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5